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View Structure Prediction Details

Protein: nas-6
Organism: Caenorhabditis elegans
Length: 180 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nas-6.

Description E-value Query
Range
Subject
Range
nas-6 - Zinc-binding metalloprotease domain status:Partially_confirmed UniProt:Q9U3S9 protein_id:CAB63429.2
182.0 [0..1] [180..165]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSVGFWHEH SRADRDDHIK INWDNILPGM KSQFDKISAV LQDLQGENYD YKSIMHYDST  60
   61 AFSRNGRNTI ETVENGFTQV IGTAMDLSPL DIVKINKLYS CK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.522879
Match: 1astA
Description: STRUCTURE OF ASTACIN AND IMPLICATIONS FOR ACTIVATION OF ASTACINS AND ZINC-LIGATION OF COLLAGENASES
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [103-180]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TKKKEKVKPA TTEEPHQLIP QVVDKNSVDS GEKCVDHFAD CPHFAQYCTR ASFFFVMKSY  60
   61 CPFTCKHCPG DRKLKKSG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.045757
Match: 1rc9A
Description: Crystal Structure of Stecrisp, a Member of CRISP Family from Trimeresurus Stejnegeri Refined at 1.6 Angstroms Resolution: Structual relationship of the two domains
Matching Structure (courtesy of the PDB):

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