YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|119600427, gi...
Organism:	Homo sapiens
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|119600427, gi....

Description	E-value	Query Range	Subject Range
gi\|114616687 - gi\|114616687\|ref\|XP_519473.2\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	8.0E-99	[1..217]	[1..217]
gi\|109068818 - gi\|109068818\|ref\|XP_001096894.1\| PREDICTED: similar to ATPase, H+ transporting, V0 subunit isoform 1...	1.0E-89	[1..217]	[1..217]
gi\|34365126 - gi\|34365126\|emb\|CAE45916.1\| hypothetical protein [Homo sapiens]	3.0E-43	[1..104]	[1..104]
gi\|73978959 - gi\|73978959\|ref\|XP_539905.2\| PREDICTED: similar to ATPase, H+ transporting, V0 subunit [Canis famili...	2.0E-30	[18..104]	[18..104]
gi\|58384490, gi\|... - gi\|58384490\|ref\|XP_313344.2\| ENSANGP00000011861 [Anopheles gambiae str. PEST], gi\|55241061\|gb\|EAA088...	7.0E-30	[27..103]	[36..112]
VA0E2_BOVIN - V-type proton ATPase subunit e 2 OS=Bos taurus GN=ATP6V0E2 PE=3 SV=1	7.0E-28	[31..104]	[1..74]
VA0E2_MOUSE - V-type proton ATPase subunit e 2 OS=Mus musculus GN=Atp6v0e2 PE=3 SV=1 VA0E2_RAT - V-type proton ATPase subunit e 2 OS=Rattus norvegicus GN=Atp6v0e2 PE=3 SV=1	8.0E-28	[31..104]	[1..74]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSALPGWGP AHLQRPLLGP ASCLGILRPA MTAHSFALPV IIFTTFWGLV GIAGPWFVPK  60
   61 GPNRGVIITM LVATAVCCYL FWLIAILAQL NPLFGPQLKN ETIWCP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	43.468521
Match:	PF05493.4
Description:	No description for PF05493.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [107-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALGMTVAPLS LTTPSSGPSP TQLCLVTSSL LLAPRDPDPQ GLPGSWKSSQ SSQPARALGS  60
   61 PGHSSGRGDV LLQYPHCSGV CPLSQGDAAG ELVWVGSFPL QTGQMPGLSP S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits