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View Structure Prediction Details

Protein: AGD15_ARATH
Organism: Arabidopsis thaliana
Length: 232 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AGD15_ARATH.

Description E-value Query
Range
Subject
Range
gi|9294154 - gi|9294154|dbj|BAB02056.1| unnamed protein product [Arabidopsis thaliana]
206.0 [0..1] [215..1]
gi|62630106 - gi|62630106|gb|AAX88852.1| unknown [Homo sapiens]
178.0 [0..6] [219..50]
gi|109101576 - gi|109101576|ref|XP_001082744.1| PREDICTED: similar to centaurin, gamma 2 isoform 2 isoform 2 [Macac...
175.0 [0..6] [219..546]
gi|92876968 - gi|92876968|gb|ABE84233.1| Arf GTPase activating protein [Medicago truncatula]
175.0 [0..1] [232..1]
AGAP1_XENLA - Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 OS=Xenopus laevis GN=agap1 PE=2 S...
174.0 [0..6] [212..602]
gi|74184704 - gi|74184704|dbj|BAE27957.1| unnamed protein product [Mus musculus]
174.0 [0..6] [219..599]

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Predicted Domain #1
Region A:
Residues: [1-147]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRKASVSKE LNAKHSKILE ALLKHPDNRE CADCRSKAPR WASVNLGIFI CMQCSGIHRS  60
   61 LGVHISQVRS ITLDTWLPDQ VAFMKSTGNA KGNEYWESEL PQHFERSSSD TFIRAKYSEK 120
  121 RWVSPGAIQP APIVSQLSCK VSHLVES

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.69897
Match: 2iqjA
Description: No description for 2iqjA was found.

Predicted Domain #2
Region A:
Residues: [148-232]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYKPETPKKA RTLSLDEEIL LHHVLQVTPP ETRTRAGSVD MKENVYVVPL PEFKKPNQKN  60
   61 ENFSSEVNQN RRTTIAPPSS WATFD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle