YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110735990, gi...
Organism:	Arabidopsis thaliana
Length:	256 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110735990, gi....

Description	E-value	Query Range	Subject Range
RF1_ALTMD - Peptide chain release factor 1 OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=prfA1 P... RF1_ALTMD - Peptide chain release factor 1 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 2834...	332.0	[0..2]	[255..18]
RF1_VIBCM - Peptide chain release factor 1 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=prfA PE=3 SV=1 gi\|116189311, gi... - gi\|75830361\|ref\|ZP_00759641.1\| COG0216: Protein chain release factor A [Vibrio cholerae MO10], gi\|25... gi\|229355248, gi... - gi\|229507743\|ref\|ZP_04397248.1\| peptide chain release factor 1 [Vibrio cholerae BX 330286], gi\|22935... RF1_VIBC3 - Peptide chain release factor 1 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 3... gi\|229513825, gi... - gi\|229513825\|ref\|ZP_04403287.1\| peptide chain release factor 1 [Vibrio cholerae TMA 21], gi\|22934900... gi\|229519157, gi... - gi\|229519157\|ref\|ZP_04408600.1\| peptide chain release factor 1 [Vibrio cholerae RC9], gi\|229343846\|g... gi\|229522130, gi... - gi\|229522130\|ref\|ZP_04411547.1\| peptide chain release factor 1 [Vibrio cholerae TM 11079-80], gi\|229... gi\|229337756, gi... - gi\|229524175\|ref\|ZP_04413580.1\| peptide chain release factor 1 [Vibrio cholerae bv. albensis VL426],... gi\|229332588, gi... - gi\|229528814\|ref\|ZP_04418204.1\| peptide chain release factor 1 [Vibrio cholerae 12129(1)], gi\|229332... gi\|229369943, gi... - gi\|229607288\|ref\|YP_002877936.1\| peptide chain release factor 1 [Vibrio cholerae MJ-1236], gi\|229369... gi\|197751315, gi... - gi\|254291410\|ref\|ZP_04962203.1\| peptide chain release factor 1 [Vibrio cholerae AM-19226], gi\|197751... gi\|148875897, gi... - gi\|153828626\|ref\|ZP_01981293.1\| peptide chain release factor 1 [Vibrio cholerae 623-39], gi\|14887589... gi\|149740734, gi... - gi\|153825583\|ref\|ZP_01978250.1\| peptide chain release factor 1 [Vibrio cholerae MZO-2], gi\|149740734... RF1_VIBCH - Peptide chain release factor 1 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N169... gi\|124116034, gi... - gi\|153213234\|ref\|ZP_01948646.1\| peptide chain release factor 1 [Vibrio cholerae 1587], gi\|124116034\|... gi\|153223504, gi... - gi\|153223504\|ref\|ZP_01953906.1\| peptide chain release factor 1 [Vibrio cholerae MAK 757], gi\|1241181... gi\|124122826, gi... - gi\|153801649\|ref\|ZP_01956235.1\| peptide chain release factor 1 [Vibrio cholerae MZO-3], gi\|124122826... RF1_VIBCH - Peptide chain release factor 1 OS=Vibrio cholerae GN=prfA PE=3 SV=1 gi\|153818801, gi... - gi\|153818801\|ref\|ZP_01971468.1\| peptide chain release factor 1 [Vibrio cholerae NCTC 8457], gi\|12651... gi\|126518907, gi... - gi\|229512021\|ref\|ZP_04401500.1\| peptide chain release factor 1 [Vibrio cholerae B33], gi\|229351986\|g...	329.0	[0..2]	[255..18]
gi\|125620572, gi... - gi\|254226890\|ref\|ZP_04920458.1\| peptide chain release factor 1 [Vibrio cholerae V51], gi\|225354432\|r...	327.0	[0..2]	[255..18]
RF1_CLOTH - Peptide chain release factor 1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 1034... gi\|196251800, gi... - gi\|196251800\|ref\|ZP_03150466.1\| peptide chain release factor 1 [Clostridium thermocellum DSM 4150], ...	327.0	[0..2]	[255..14]
RF1_PSESM - Peptide chain release factor 1 OS=Pseudomonas syringae pv. tomato GN=prfA PE=3 SV=1 RF1_PSESM - Peptide chain release factor 1 OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=prfA PE=3 SV=1	327.0	[0..2]	[255..18]
RF1_PSE14 - Peptide chain release factor 1 OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN...	326.0	[0..2]	[255..18]
gi\|37679115, gi\|... - gi\|37679115\|ref\|NP_933724.1\| peptide chain release factor 1 [Vibrio vulnificus YJ016], gi\|37197857\|d... gi\|27363734, gi\|... - gi\|27363734\|ref\|NP_759262.1\| peptide chain release factor 1 [Vibrio vulnificus CMCP6], gi\|27359850\|g...	326.0	[0..2]	[255..19]
RF1_VIBVU - Peptide chain release factor 1 OS=Vibrio vulnificus GN=prfA PE=3 SV=2 RF1_VIBVY - Peptide chain release factor 1 OS=Vibrio vulnificus (strain YJ016) GN=prfA PE=3 SV=2 RF1_VIBVU - Peptide chain release factor 1 OS=Vibrio vulnificus (strain CMCP6) GN=prfA PE=3 SV=2	326.0	[0..2]	[255..18]
RF1_PSEU2 - Peptide chain release factor 1 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=prfA PE=3 SV=1	326.0	[0..2]	[255..18]
RF1_PSEPF - Peptide chain release factor 1 OS=Pseudomonas fluorescens (strain Pf0-1) GN=prfA PE=3 SV=1	326.0	[0..2]	[255..18]

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Predicted Domain #1

Region A:
Residues: [1-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSFRSLSTR QPEYSPEEFS RANKELRKLR DSMLLINDLR AKQKEIDGLK SLVSESSDDK  60
   61 DMLDLAVGEL DEAVEEEKRL QTLLLKSLLP KDEADERDCI LEVRAGTGGE EASLFAMDIF 120
  121 RMYERYSQKK GWKFDIVDIT ESDMKGYKEA SAAICGASVY GKLKFESGIH RVQRIPITEK 180
  181 SGRIHTSAIS VAILPQADEV DVQLRNEDLR IDTYRSGGSG GQHANTTNSA VRIIHLPTGM 240
  241 MVSIQDERSQ HMSQST

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	83.522879
Match:	2b3tB
Description:	Molecular basis for bacterial class 1 release factor methylation by PrmC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits