YRC Public Data Repository - Protein Structure Prediction

Protein:	RPP30
Organism:	Homo sapiens
Length:	268 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPP30.

Description	E-value	Query Range	Subject Range
gi\|73997973 - gi\|73997973\|ref\|XP_534959.2\| PREDICTED: similar to Ribonuclease P protein subunit p30 (RNaseP protei...	8.0E-80	[1..268]	[1..268]
gi\|109089903 - gi\|109089903\|ref\|XP_001087609.1\| PREDICTED: ribonuclease P (30kD) [Macaca mulatta]	2.0E-79	[1..267]	[1..267]
gi\|60653449 - gi\|60653449\|gb\|AAX29419.1\| ribonuclease P/MRP 30kDa subunit [synthetic construct]	3.0E-79	[1..268]	[1..268]
gi\|42476125, gi\|... - gi\|42476125\|ref\|NP_062301.2\| ribonuclease P/MRP 30kDa subunit [Mus musculus], gi\|38566076\|gb\|AAH6214...	4.0E-79	[1..268]	[1..268]
gi\|114631777 - gi\|114631777\|ref\|XP_521557.2\| PREDICTED: ribonuclease P (30kD) [Pan troglodytes]	8.0E-79	[1..265]	[1..265]
gi\|109463823, gi... - gi\|109463823\|ref\|XP_001080083.1\| PREDICTED: similar to Ribonuclease P protein subunit p30 (RNaseP pr...	3.0E-78	[1..268]	[1..268]
RPP30_BOVIN - Ribonuclease P protein subunit p30 OS=Bos taurus GN=RPP30 PE=2 SV=1	4.0E-78	[1..267]	[1..267]

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Predicted Domain #1

Region A:
Residues: [1-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVFADLDLR AGSDLKALRG LVETAAHLGY SVVAINHIVD FKEKKQEIEK PVAVSELFTT  60
   61 LPIVQGKSRP IKILTRLTII VSDPSHCNVL RATSSRARLY DVVAVFPKTE KLFHIACTHL 120
  121 DVDLVCITVT EKLPFYFKRP PINVAIDRGL AFELVYSPAI KDSTMRRYTI SSALNLMQIC 180
  181 KGKNVIISSA AERPLEIRGP YDVANLGLLF GLSESDAKAA VSTNCRAALL HGETRKTAFG 240
  241 IISTVKKPRP SEGDEDCLPA SKKAKCEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.39794
Match:	1m65A
Description:	Hypothetical protein YcdX
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits