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View Structure Prediction Details

Protein: RPL7
Organism: Homo sapiens
Length: 248 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL7.

Description E-value Query
Range
Subject
Range
gi|76779245 - gi|76779245|gb|AAI06057.1| RPL7 protein [Homo sapiens]
0.0 [1..248] [71..318]
gi|114620484 - gi|114620484|ref|XP_519807.2| PREDICTED: similar to ribosomal protein L7 [Pan troglodytes]
0.0 [5..248] [29..272]
gi|73999236 - gi|73999236|ref|XP_535102.2| PREDICTED: similar to 60S ribosomal protein L7 isoform 1 [Canis familia...
0.0 [1..248] [12..259]
gi|109086742 - gi|109086742|ref|XP_001086568.1| PREDICTED: similar to 60S ribosomal protein L7 [Macaca mulatta]
0.0 [1..227] [256..481]
gi|60653299 - gi|60653299|gb|AAX29344.1| ribosomal protein L7 [synthetic construct]
0.0 [1..248] [1..248]
RL7_BOVIN - 60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1
0.0 [1..248] [1..248]
RL7_PONAB - 60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1
RL7_PONPY - 60S ribosomal protein L7 - Pongo pygmaeus (Orangutan)
0.0 [1..248] [1..247]

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Predicted Domain #1
Region A:
Residues: [1-97]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGVEEKKKE VPAVPETLKK KRRNFAELKI KRLRKKFAQK MLRKARRKLI YEKAKHYHKE  60
   61 YRQMYRTEIR MARMARKAGN FYVPAEPKLA FVIRIRG

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 34.356547
Match: PF08079.3
Description: No description for PF08079.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.886 N/A N/A a.24.3 Cytochromes

Predicted Domain #2
Region A:
Residues: [98-248]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INGVSPKVRK VLQLLRLRQI FNGTFVKLNK ASINMLRIVE PYIAWGYPNL KSVNELIYKR  60
   61 GYGKINKKRI ALTDNALIAR SLGKYGIICM EDLIHEIYTV GKRFKEANNF LWPFKLSSPR 120
  121 GGMKKKTTHF VEGGDAGNRE DQINRLIRRM N

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.69897
Match: 1s1iF
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle