YRC Public Data Repository - Protein Structure Prediction

Protein:	MAFF
Organism:	Homo sapiens
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MAFF.

Description	E-value	Query Range	Subject Range
gi\|30585181, gi\|... - gi\|61370635\|gb\|AAX43528.1\| v-maf musculoaponeurotic fibrosarcoma oncogene-like F [synthetic construc...	3.0E-29	[1..164]	[1..164]
gi\|6429134, gi\|7... - pir\|\|JC7112 MafF protein homolog - human, gi\|6429134\|dbj\|BAA86871.1\| Maf-related DNA binding protein...	9.0E-29	[1..164]	[1..164]
gi\|109094174, gi... - gi\|109094176\|ref\|XP_001092994.1\| PREDICTED: v-maf musculoaponeurotic fibrosarcoma oncogene homolog F...	6.0E-28	[1..164]	[1..164]
gi\|76654393 - gi\|76654393\|ref\|XP_876322.1\| PREDICTED: similar to Transcription factor MafK (Erythroid transcriptio...	2.0E-25	[4..155]	[148..301]
gi\|114686418 - gi\|114686418\|ref\|XP_001147709.1\| PREDICTED: similar to OTTHUMP00000028701 [Pan troglodytes]	5.0E-25	[1..164]	[90..253]
gi\|109482561, gi... - gi\|194474012\|ref\|NP_001124045.1\| v-maf musculoaponeurotic fibrosarcoma oncogene homolog F [Rattus no...	5.0E-24	[1..164]	[1..156]
MAFF_CHICK - Transcription factor MafF OS=Gallus gallus GN=MAFF PE=2 SV=1	1.0E-22	[1..148]	[1..147]
gi\|74219084 - gi\|74219084\|dbj\|BAE26685.1\| unnamed protein product [Mus musculus]	2.0E-22	[1..142]	[1..142]
gi\|73969647 - gi\|73969647\|ref\|XP_538376.2\| PREDICTED: similar to Transcription factor MafF (V-maf musculoaponeurot...	2.0E-22	[1..160]	[1..159]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVDPLSSKA LKIKRELSEN TPHLSDEALM GLSVRELNRH LRGLSAEEVT RLKQRRRTLK  60
   61 NRGYAASCRV KRVCQKEELQ KQKSELEREV DKLARENAAM RLELDALRGK CEALQGFARS 120
  121 VAAARGPATL VAPASVITIV KSTPGSGSGP AHGPDPAHGP ASCS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.522879
Match:	1hjbA
Description:	C/ebp beta
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits