YRC Public Data Repository - Protein Structure Prediction

Protein:	COX7A2L
Organism:	Homo sapiens
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX7A2L.

Description	E-value	Query Range	Subject Range
gi\|60653439, gi\|... - gi\|60653439\|gb\|AAX29414.1\| cytochrome c oxidase subunit VIIa polypeptide 2 like [synthetic construct...	2.0E-51	[1..114]	[1..114]
gi\|109102722, gi... - gi\|109149705\|ref\|XP_001085508.1\| PREDICTED: similar to cytochrome c oxidase subunit VIIa polypeptide...	2.0E-51	[1..114]	[1..114]
gi\|2465178 - gi\|2465178\|dbj\|BAA22571.1\| COX7RP [Homo sapiens]	5.0E-51	[1..114]	[1..114]
gi\|57098271 - gi\|57098271\|ref\|XP_532946.1\| PREDICTED: similar to cytochrome c oxidase subunit VIIa polypeptide 2 l...	6.0E-50	[1..114]	[1..114]
COX7R_BOVIN - Cytochrome c oxidase subunit 7A-related protein, mitochondrial OS=Bos taurus GN=COX7A2L PE=3 SV=1	2.0E-49	[1..114]	[1..114]
gi\|94392438, gi\|... - gi\|94393834\|ref\|XP_977744.1\| PREDICTED: similar to cytochrome c oxidase subunit VIIa polypeptide 2-l...	3.0E-49	[1..114]	[1..113]
gi\|27716471, gi\|... - ref\|XP_216635.1\| similar to Cox7a2l protein [Rattus norvegicus], gi\|187469733\|gb\|AAI66896.1\| Cox7a2l...	1.0E-47	[1..114]	[1..113]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYYKFSGFTQ KLAGAWASEA YSPQGLKPVV STEAPPIIFA TPTKLTSDST VYDYAGKNKV  60
   61 PELQKFFQKA DGVPVYLKRG LPDQMLYRTT MALTVGGTIY CLIALYMASQ PKNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.09691
Match:	1occJ
Description:	Mitochondrial cytochrome c oxidase subunit VIIa
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits