| Protein: | GRIK2 |
| Organism: | Homo sapiens |
| Length: | 908 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GRIK2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..908] | [1..908] |
|
|
0.0 | [1..908] | [1..908] |
|
|
0.0 | [1..908] | [1..908] |
|
|
0.0 | [40..908] | [30..898] |
|
|
0.0 | [1..889] | [1..889] |
|
Region A: Residues: [1-506] |
1 11 21 31 41 51
| | | | | |
1 MKIIFPILSN PVFRRTVKLL LCLLWIGYSQ GTTHVLRFGG IFEYVESGPM GAEELAFRFA 60
61 VNTINRNRTL LPNTTLTYDT QKINLYDSFE ASKKACDQLS LGVAAIFGPS HSSSANAVQS 120
121 ICNALGVPHI QTRWKHQVSD NKDSFYVSLY PDFSSLSRAI LDLVQFFKWK TVTVVYDDST 180
181 GLIRLQELIK APSRYNLRLK IRQLPADTKD AKPLLKEMKR GKEFHVIFDC SHEMAAGILK 240
241 QALAMGMMTE YYHYIFTTLD LFALDVEPYR YSGVNMTGFR ILNTENTQVS SIIEKWSMER 300
301 LQAPPKPDSG LLDGFMTTDA ALMYDAVHVV SVAVQQFPQM TVSSLQCNRH KPWRFGTRFM 360
361 SLIKEAHWEG LTGRITFNKT NGLRTDFDLD VISLKEEGLE KIGTWDPASG LNMTESQKGK 420
421 PANITDSLSN RSLIVTTILE EPYVLFKKSD KPLYGNDRFE GYCIDLLREL STILGFTYEI 480
481 RLVEDGKYGA QDDANGQWNG MVRELI
|
| Detection Method: |  |
| Confidence: | 44.522879 |
| Match: | 2e4uA |
| Description: | No description for 2e4uA was found. |
|
Region A: Residues: [507-598] |
1 11 21 31 41 51
| | | | | |
1 DHKADLAVAP LAITYVREKV IDFSKPFMTL GISILYRKPN GTNPGVFSFL NPLSPDIWMY 60
61 ILLAYLGVSC VLFVIARFSP YEWYNPHPCN PD
|
| Detection Method: | |
| Confidence: | 2.35 |
| Match: | 1yaeA |
| Description: | Structure of the Kainate Receptor Subunit GluR6 Agonist Binding Domain Complexed with Domoic Acid |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [599-660] |
1 11 21 31 41 51
| | | | | |
1 SDVVENNFTL LNSFWFGVGA LMQQGSELMP KALSTRIVGG IWWFFTLIII SSYTANLAAF 60
61 LT
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [661-843] |
1 11 21 31 41 51
| | | | | |
1 VERMESPIDS ADDLAKQTKI EYGAVEDGAT MTFFKKSKIS TYDKMWAFMS SRRQSVLVKS 60
61 NEEGIQRVLT SDYAFLMEST TIEFVTQRNC NLTQIGGLID SKGYGVGTPM GSPYRDKITI 120
121 AILQLQEEGK LHMMKEKWWR GNGCPEEESK EASALGVQNI GGIFIVLAAG LVLSVFVAVG 180
181 EFL
|
| Detection Method: | |
| Confidence: | 41.522879 |
| Match: | 1yaeA |
| Description: | Structure of the Kainate Receptor Subunit GluR6 Agonist Binding Domain Complexed with Domoic Acid |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [844-908] |
1 11 21 31 41 51
| | | | | |
1 YKSKKNAQLE KRSFCSAMVE ELRMSLKCQR RLKHKPQAPV IVKTEEVINM HTFNDRRLPG 60
61 KETMA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.589 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.474 | a.112.1 | Description not found. |
| View | Download | 0.450 | d.58.17 | Metal-binding domain |
| View | Download | 0.442 | d.58.17 | Metal-binding domain |
| View | Download | 0.441 | d.50.3 | PI-Pfui intein middle domain |
