YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|38201680, gi\|...
Organism:	Homo sapiens
Length:	358 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|38201680, gi|....

Description	E-value	Query Range	Subject Range
gi\|114682755 - gi\|114682755\|ref\|XP_001170101.1\| PREDICTED: meiotic recombination protein SPO11 isoform 1 [Pan trogl...	0.0	[1..358]	[1..358]
gi\|109091518 - gi\|109091518\|ref\|XP_001088459.1\| PREDICTED: similar to meiotic recombination protein SPO11 isoform b...	0.0	[1..358]	[1..358]
gi\|56204502 - gi\|56204502\|emb\|CAI21520.1\| SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae) [H...	0.0	[1..358]	[1..354]
gi\|5453472, gi\|1... - gi\|9367033\|gb\|AAF87090.1\|AF165313_1 SPO11 [Mus musculus], gi\|5532652\|gb\|AAD44811.1\|AF149309_1 Spo11 ...	0.0	[1..358]	[1..358]

Back

Predicted Domain #1

Region A:
Residues: [1-358]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFAPMGPEA SFFDVLDRHR ESLLAALRRG GREPPTGGSR LASRFEDSVG LQMVSHCTTR  60
   61 KIKSDSPKSA QKFSLILKIL SMIYKLVQSN TYATKRDIYY TDSQLFGNQT VVDNIINDIS 120
  121 CMLKVSRRSL HILSTSKGLI AGNLRYIEED GTKVNCTCGA TAVAVPSNIQ GIRNLVTDAK 180
  181 FVLIVEKDAT FQRLLDDNFC NKLSPCIMIT GKGVPDLNTR LLVKKLWDTF HVPVFTLVDA 240
  241 DPHGIEIMCI YKYGSMSMSF EAHHLTVPAI RWLGLLPSDL KRLNVPKDSL IPLTKRDQMK 300
  301 LDSILRRPYV TCQPFWRKEM EIMADSKMKA EIQALTFLSS DYLSRVYLPN KLKFGGWI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.69897
Match:	1d3yA
Description:	DNA topoisomerase IV, alpha subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.517579458725582	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: