YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS5
Organism:	Homo sapiens
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS5.

Description	E-value	Query Range	Subject Range
gi\|109460985, gi... - gi\|109460985\|ref\|XP_001062647.1\| PREDICTED: similar to ribosomal protein S5 [Rattus norvegicus], gi\|...	1.0E-78	[1..204]	[52..255]
gi\|61369836 - gi\|61369836\|gb\|AAX43400.1\| ribosomal protein S5 [synthetic construct]	7.0E-78	[1..204]	[1..204]
gi\|62897773 - gi\|62897773\|dbj\|BAD96826.1\| ribosomal protein S5 variant [Homo sapiens]	2.0E-77	[1..204]	[1..204]
gi\|74139334, gi\|... - gi\|74214786\|dbj\|BAE31228.1\| unnamed protein product [Mus musculus], gi\|74211025\|dbj\|BAE37616.1\| unna...	3.0E-77	[1..204]	[1..204]
gi\|15294021 - gi\|15294021\|gb\|AAK95187.1\|AF402813_1 40S ribosomal protein S5 [Ictalurus punctatus]	1.0E-75	[1..204]	[1..203]
gi\|40643036 - gi\|40643036\|emb\|CAD91445.1\| ribosomal protein S5 [Crassostrea gigas]	7.0E-75	[1..204]	[5..208]
gi\|114679429 - gi\|114679429\|ref\|XP_001147070.1\| PREDICTED: similar to ribosomal protein S5 isoform 1 [Pan troglodyt... tr\|M0R0R2\|M0R0R2... - 40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=3 SV=1	1.0E-74	[1..204]	[1..225]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEWETAAPA VAETPDIKLF GKWSTDDVQI NDISLQDYIA VKEKYAKYLP HSAGRYAAKR  60
   61 FRKAQC

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.1
Match:	1iqvA
Description:	Ribosomal protein S7
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [67-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIVERLTNSM MMHGRNNGKK LMTVRIVKHA FEIIHLLTGE NPLQVLVNAI INSGPREDST  60
   61 RIGRAGTVRR QAVDVSPLRR VNQAIWLLCT GAREAAFRNI KTIAECLADE LINAAKGSSN 120
  121 SYAIKKKDEL ERVAKSNR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.39794
Match:	1s1hG
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits