YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS7
Organism:	Homo sapiens
Length:	194 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS7.

Description	E-value	Query Range	Subject Range
gi\|76666230 - gi\|76666230\|ref\|XP_581800.2\| PREDICTED: similar to 40S ribosomal protein S7 (S8) [Bos taurus]	0.0	[1..194]	[177..370]
gi\|50744918 - gi\|50744918\|ref\|XP_419936.1\| PREDICTED: similar to ribosomal protein S7 [Gallus gallus]	0.0	[1..194]	[95..288]
gi\|60652833 - gi\|60652833\|gb\|AAX29111.1\| ribosomal protein S7 [synthetic construct]	6.0E-99	[1..194]	[1..194]
gi\|148699419, gi... - gi\|94409504\|ref\|XP_987138.1\| PREDICTED: similar to 40S ribosomal protein S7 (S8) [Mus musculus], gi\|...	2.0E-98	[1..194]	[1..194]
gi\|55639547 - gi\|55639547\|ref\|XP_509573.1\| PREDICTED: similar to ribosomal protein S7 [Pan troglodytes]	2.0E-97	[1..194]	[1..194]
RS7_XENLA - 40S ribosomal protein S7 OS=Xenopus laevis GN=rps7 PE=2 SV=2	2.0E-97	[1..194]	[1..194]
gi\|337518 - gi\|337518\|gb\|AAB00969.1\| ribosomal protein	6.0E-97	[3..194]	[1..192]
RS7_ICTPU - 40S ribosomal protein S7 OS=Ictalurus punctatus GN=rps7 PE=2 SV=1	1.0E-96	[1..194]	[1..194]
RS7_TAKRU - 40S ribosomal protein S7 OS=Takifugu rubripes GN=rps7 PE=3 SV=1	4.0E-96	[1..194]	[1..194]
RS7_DANRE - 40S ribosomal protein S7 OS=Danio rerio GN=rps7 PE=2 SV=1	9.0E-96	[1..194]	[1..194]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSSSAKIVK PNGEKPDEFE SGISQALLEL EMNSDLKAQL RELNITAAKE IEVGGGRKAI  60
   61 IIFVPVPQLK SFQKIQVRLV RELEKKFSGK HVVFIAQRRI LPKPTRKSRT KNKQKRPRSR 120
  121 TLTAVHDAIL EDLVFPSEIV GKRIRVKLDG SRLIKVHLDK AQQNNVEHKV ETFSGVYKKL 180
  181 TGKDVNFEFP EFQL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	144.920819
Match:	PF01251.9
Description:	No description for PF01251.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits