YRC Public Data Repository - Protein Structure Prediction

Protein:	TRMT6
Organism:	Homo sapiens
Length:	497 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRMT6.

Description	E-value	Query Range	Subject Range
gi\|114680855 - gi\|114680855\|ref\|XP_001166710.1\| PREDICTED: CGI-09 protein [Pan troglodytes]	0.0	[1..497]	[1..497]
gi\|109092811 - gi\|109092811\|ref\|XP_001115807.1\| PREDICTED: similar to CGI-09 protein [Macaca mulatta]	0.0	[1..497]	[1..497]
TRM6_BOVIN - tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Bos taurus GN=TRMT6 PE=2 SV=...	0.0	[1..497]	[1..497]
TRM6_MOUSE - tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Mus musculus GN=Trmt6 PE=1 S...	0.0	[1..497]	[1..497]
gi\|73991615 - gi\|73991615\|ref\|XP_542900.2\| PREDICTED: similar to CGI-09 protein [Canis familiaris]	0.0	[1..497]	[127..623]
gi\|62645912, gi\|... - gi\|62645912\|ref\|XP_230548.3\| PREDICTED: similar to CGI-09 protein [Rattus norvegicus], gi\|157821217\|...	0.0	[3..497]	[4..495]
gi\|6330102 - gi\|6330102\|dbj\|BAA86467.1\| KIAA1153 protein [Homo sapiens]	0.0	[1..388]	[25..412]

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Predicted Domain #1

Region A:
Residues: [1-497]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGSGEQPGP QPQHPGDHRI RDGDFVVLKR EDVFKAVQVQ RRKKVTFEKQ WFYLDNVIGH  60
   61 SYGTAFEVTS GGSLQPKKKR EEPTAETKEA GTDNRNIVDD GKSQKLTQDD IKALKDKGIK 120
  121 GEEIVQQLIE NSTTFRDKTE FAQDKYIKKK KKKYEAIITV VKPSTRILSI MYYAREPGKI 180
  181 NHMRYDTLAQ MLTLGNIRAG NKMIVMETCA GLVLGAMMER MGGFGSIIQL YPGGGPVRAA 240
  241 TACFGFPKSF LSGLYEFPLN KVDSLLHGTF SAKMLSSEPK DSALVEESNG TLEEKQASEQ 300
  301 ENEDSMAEAP ESNHPEDQET METISQDPEH KGPKERGSKK DYIQEKQRRQ EEQRKRHLEA 360
  361 AALLSERNAD GLIVASRFHP TPLLLSLLDF VAPSRPFVVY CQYKEPLLEC YTKLRERGGV 420
  421 INLRLSETWL RNYQVLPDRS HPKLLMSGGG GYLLSGFTVA MDNLKADTSL KSNASTLESH 480
  481 ETEEPAAKKR KCPESDS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.32
Match:	1i9gA
Description:	Probable methyltransferase Rv2118c
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits