YRC Public Data Repository - Protein Structure Prediction

Protein:	APITD1
Organism:	Homo sapiens
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APITD1.

Description	E-value	Query Range	Subject Range
gi\|9758240, gi\|1... - gi\|9758240\|dbj\|BAB08739.1\| unnamed protein product [Arabidopsis thaliana], gi\|15241317\|ref\|NP_199906...	3.0E-29	[11..125]	[116..233]
gi\|85102562 - gi\|85102562\|ref\|XP_961356.1\| hypothetical protein ( (AL513444) conserved hypothetical protein [Neuro... gi\|12718388, gi\|... - gi\|32404636\|ref\|XP_322931.1\| hypothetical protein ( (AL513444) conserved hypothetical protein [Neuro...	4.0E-29	[7..118]	[2..113]
gi\|46125567, gi\|... - gi\|46125567\|ref\|XP_387337.1\| hypothetical protein FG07161.1 [Gibberella zeae PH-1], gi\|42553777\|gb\|E...	8.0E-28	[13..118]	[7..112]
CE25311 - status:Partially_confirmed UniProt:Q9TW59 protein_id:CAB61043.1	3.0E-27	[5..117]	[344..467]
CENPS_MOUSE - Centromere protein S OS=Mus musculus GN=Apitd1 PE=2 SV=1	3.0E-27	[13..127]	[12..126]
CENPS_BOVIN - Centromere protein S OS=Bos taurus GN=APITD1 PE=2 SV=1	3.0E-27	[1..138]	[1..138]
gi\|73950936 - gi\|73950936\|ref\|XP_544575.2\| PREDICTED: similar to apoptosis-inducing, TAF9-like domain 1 isoform A ...	1.0E-26	[18..132]	[266..380]
gi\|41327705 - gi\|41327705\|ref\|NP_954992.1\| apoptosis-inducing, TAF9-like domain 1 isoform B [Homo sapiens]	5.0E-25	[40..138]	[1..99]
gi\|33086672 - gi\|33086672\|gb\|AAP92648.1\| Cc2-27 [Rattus norvegicus]	9.0E-25	[13..92]	[749..828]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEEAETEEQ QRFSYQQRLK AAVHYTVGCL CEEVALDKEM QFSKQTIAAI SELTFRQCEN  60
   61 FAKDLEMFAR HAKRTTINTE DVKLLARRSN SLLKYITDKS EEIAQINLER KAQKKKKSED 120
  121 GSKNSRQPAE AGVVESEN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.69897
Match:	1tafA
Description:	TAF(II)42
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.581886805340955	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: