| Protein: | PUF60 |
| Organism: | Homo sapiens |
| Length: | 559 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUF60.
| Description | E-value | Query Range |
Subject Range |
|
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238.0 | [0..1] | [559..1] |
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237.0 | [0..1] | [559..1] |
|
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237.0 | [0..1] | [559..1] |
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236.0 | [0..1] | [559..1] |
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236.0 | [0..4] | [559..1] |
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234.0 | [0..1] | [559..1] |
|
Region A: Residues: [1-128] |
1 11 21 31 41 51
| | | | | |
1 MATATIALQV NGQQGGGSEP AAAAAVVAAG DKWKPPQGTD SIKMENGQST AAKLGLPPLT 60
61 PEQQEALQKA KKYAMEQSIK SVLVKQTIAH QQQQLTNLQM AAVTMGFGDP LSPLQSMAAQ 120
121 RQRALAIM
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.607 | a.7.1 | Spectrin repeat |
| View | Download | 0.578 | a.47.2 | t-snare proteins |
| View | Download | 0.530 | a.7.1 | Spectrin repeat |
| View | Download | 0.482 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.461 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.344 | a.7.1 | Spectrin repeat |
| View | Download | 0.313 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.302 | a.47.2 | t-snare proteins |
| View | Download | 0.284 | a.7.1 | Spectrin repeat |
| View | Download | 0.264 | a.216.1 | Description not found. |
|
Region A: Residues: [129-317] |
1 11 21 31 41 51
| | | | | |
1 CRVYVGSIYY ELGEDTIRQA FAPFGPIKSI DMSWDSVTMK HKGFAFVEYE VPEAAQLALE 60
61 QMNSVMLGGR NIKVGRPSNI GQAQPIIDQL AEEARAFNRI YVASVHQDLS DDDIKSVFEA 120
121 FGKIKSCTLA RDPTTGKHKG YGFIEYEKAQ SSQDAVSSMN LFDLGGQYLR VGKAVTPPMP 180
181 LLTPATPGG
|
| Detection Method: | |
| Confidence: | 34.221849 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [318-431] |
1 11 21 31 41 51
| | | | | |
1 LPPAAAVAAA AATAKITAQE AVAGAAVLGT LGTPGLVSPA LTLAQPLGTL PQAVMAAQAP 60
61 GVITGVTPAR PPIPVTIPSV GVVNPILASP PTLGLLEPKK EKEEEELFPE SERP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.545 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.521 | a.47.2 | t-snare proteins |
| View | Download | 0.459 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.443 | a.118.8 | TPR-like |
| View | Download | 0.372 | d.370.1 | Description not found. |
| View | Download | 0.297 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.292 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.289 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.276 | a.47.2 | t-snare proteins |
|
Region A: Residues: [432-559] |
1 11 21 31 41 51
| | | | | |
1 EMLSEQEHMS ISGSSARHMV MQKLLRKQES TVMVLRNMVD PKDIDDDLEG EVTEECGKFG 60
61 AVNRVIIYQE KQGEEEDAEI IVKIFVEFSI ASETHKAIQA LNGRWFAGRK VVAEVYDQER 120
121 FDNSDLSA
|
| Detection Method: | |
| Confidence: | 4.69897 |
| Match: | 1jmtA |
| Description: | U2AF35 (35 KDa subunit) |
Matching Structure (courtesy of the PDB): |
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