YRC Public Data Repository - Protein Structure Prediction

Protein:	TRMT112
Organism:	Homo sapiens
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRMT112.

Description	E-value	Query Range	Subject Range
tr\|G3I886\|G3I886... - TRM112-like protein OS=Cricetulus griseus GN=I79_019749 PE=4 SV=1 gi\|27661288, gi\|... - gi\|27661288\|ref\|XP_215167.1\| PREDICTED: similar to UPF0315 protein [Rattus norvegicus], gi\|197246788...	1.0E-52	[1..125]	[1..125]
TR112_MOUSE - Multifunctional methyltransferase subunit TRM112-like protein OS=Mus musculus GN=Trmt112 PE=1 SV=1	2.0E-52	[1..125]	[1..125]
gi\|109105577 - gi\|109105577\|ref\|XP_001114960.1\| PREDICTED: similar to UPF0315 protein AD-001 [Macaca mulatta]	3.0E-51	[1..125]	[1..125]
gi\|20809962 - gi\|20809962\|gb\|AAH29482.1\| Hypothetical protein HSPC152 [Homo sapiens]	4.0E-51	[1..125]	[1..125]
TR112_BOVIN - Multifunctional methyltransferase subunit TRM112-like protein OS=Bos taurus GN=TRMT112 PE=2 SV=1	5.0E-50	[1..125]	[1..125]
gi\|57099691 - gi\|57099691\|ref\|XP_533242.1\| PREDICTED: similar to UPF0315 protein [Canis familiaris]	7.0E-50	[1..125]	[1..125]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLTHNLLS SHVRGVGSRG FPLRLQATEV RICPVEFNPN FVARMIPKVE WSAFLEAADN  60
   61 LRLIQVPKGP VEGYEENEEF LRTMHHLLLE VEVIEGTLQC PESGRMFPIS RGIPNMLLSE 120
  121 EETES

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	2j6aA
Description:	No description for 2j6aA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits