YRC Public Data Repository - Protein Structure Prediction

Protein:	GAPT
Organism:	Homo sapiens
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GAPT.

Description	E-value	Query Range	Subject Range
gi\|114600152 - gi\|114600152\|ref\|XP_001139357.1\| PREDICTED: hypothetical protein [Pan troglodytes]	1.0E-91	[1..157]	[1..157]
gi\|109077309 - gi\|109077309\|ref\|XP_001102973.1\| PREDICTED: hypothetical protein [Macaca mulatta]	6.0E-86	[1..157]	[1..157]
GAPT_MOUSE - Protein GAPT OS=Mus musculus GN=Gapt PE=1 SV=1	4.0E-63	[25..155]	[25..155]
gi\|157823571, gi... - gi\|157823571\|ref\|NP_001102961.1\| Grb2-binding adaptor protein, transmembrane [Rattus norvegicus], gi...	2.0E-60	[25..155]	[25..154]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSCGNNLA AISVGISLLL LLVVCGIGCV WHWKHRVATR FTLPRFLQRR SSRRKVCTKT  60
   61 FLGPRIIGLR HEISVETQDH KSAVRGNNTH DNYENVEAGP PKAKGKTDKE LYENTGQSNF 120
  121 EEHIYGNETS SDYYNFQKPR PSEVPQDEDI YILPDSY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits