YRC Public Data Repository - Protein Structure Prediction

Protein:	PDXP
Organism:	Homo sapiens
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDXP.

Description	E-value	Query Range	Subject Range
PLPP_BOVIN - Pyridoxal phosphate phosphatase OS=Bos taurus GN=PDXP PE=1 SV=1	1.0E-53	[1..296]	[1..296]
PLPP_RAT - Pyridoxal phosphate phosphatase OS=Rattus norvegicus GN=Pdxp PE=1 SV=2	1.0E-52	[1..294]	[1..290]
PLPP_MOUSE - Pyridoxal phosphate phosphatase OS=Mus musculus GN=Pdxp PE=1 SV=1	5.0E-52	[1..296]	[1..292]
gi\|47226097 - gi\|47226097\|emb\|CAG04471.1\| unnamed protein product [Tetraodon nigroviridis]	2.0E-45	[2..295]	[13..314]
gi\|37362312, gi\|... - gi\|47086593\|ref\|NP_997891.1\| hypothetical protein LOC792824 [Danio rerio], gi\|37362312\|gb\|AAQ91284.1... gi\|187608693, gi... - gi\|187608693\|ref\|NP_001120188.1\| hypothetical protein LOC100145229 [Xenopus (Silurana) tropicalis], ...	2.0E-45	[2..295]	[4..305]
gi\|114660450 - gi\|114660450\|ref\|XP_001162359.1\| PREDICTED: hypothetical protein [Pan troglodytes]	2.0E-44	[3..295]	[12..320]
PGP - phosphoglycolate phosphatase HGNC:8909\|MIM:17... - phosphatase gi\|162319440, gi... - gi\|162319440\|gb\|AAI57036.1\| Phosphoglycolate phosphatase [synthetic construct], gi\|162318526\|gb\|AAI5...	4.0E-44	[3..295]	[12..320]
gi\|109127253 - gi\|109127253\|ref\|XP_001084229.1\| PREDICTED: similar to pyridoxal (pyridoxine, vitamin B6) phosphatas...	6.0E-44	[3..295]	[144..452]

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Predicted Domain #1

Region A:
Residues: [1-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARCERLRGA ALRDVLGRAQ GVLFDCDGVL WNGERAVPGA PELLERLARA GKAALFVSNN  60
   61 SRRARPELAL RFARLGFGGL RAEQLFSSAL CAARLLRQRL PGPPDAPGAV FVLGGEGLRA 120
  121 ELRAAGLRLA GDPSAGDGAA PRVRAVLVGY DEHFSFAKLR EACAHLRDPE CLLVATDRDP 180
  181 WHPLSDGSRT PGTGSLAAAV ETASGRQALV VGKPSPYMFE CITENFSIDP ARTLMVGDRL 240
  241 ETDILFGHRC GMTTVLTLTG VSRLEEAQAY LAAGQHDLVP HYYVESIADL TEGLED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.0
Match:	2cfrA
Description:	No description for 2cfrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits