YRC Public Data Repository - Protein Structure Prediction

Protein:	SRP19
Organism:	Homo sapiens
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRP19.

Description	E-value	Query Range	Subject Range
gi\|12846431 - gi\|12846431\|dbj\|BAB27165.1\| unnamed protein product [Mus musculus]	206.0	[0..1]	[135..1]
SRP19_BOVIN - Signal recognition particle 19 kDa protein OS=Bos taurus GN=SRP19 PE=2 SV=1	206.0	[0..1]	[135..1]
gi\|27683535, gi\|... - gi\|27683535\|ref\|XP_214599.1\| PREDICTED: similar to signal recognition particle 19kDa [Rattus norvegi...	205.0	[0..1]	[135..1]
SRP19_PONPY - Signal recognition particle 19 kDa protein - Pongo pygmaeus (Orangutan) SRP19 - signal recognition particle 19kDa gi\|114601150 - gi\|114601150\|ref\|XP_001144865.1\| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes] SRP19_PONAB - Signal recognition particle 19 kDa protein OS=Pongo abelii GN=SRP19 PE=1 SV=2	204.0	[0..1]	[135..1]
gi\|197100382 - gi\|197100382\|ref\|NP_001125454.1\| signal recognition particle 19kDa [Pongo abelii] gi\|55728098 - gi\|55728098\|emb\|CAH90799.1\| hypothetical protein [Pongo abelii]	203.0	[0..1]	[135..3]
gi\|73954385, gi\|... - gi\|73954385\|ref\|XP_536284.2\| PREDICTED: similar to signal recognition particle 19kDa [Canis familiar...	203.0	[0..1]	[135..1]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACTAARSPA DQDRFICIYP AYLNNKKTIA EGRRIPISKA VENPTATEIQ DVCSAVGLNV  60
   61 FLEKNKMYSR EWNRDVQYRG RVRVQLKQED GSLCLVQFPS RKSVMLYAAE MIPKLKTRTQ 120
  121 KTGGADQSLQ QGEGSKKGKG KKKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.39794
Match:	1jidA
Description:	SRP19
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits