YRC Public Data Repository - Protein Structure Prediction

Protein:	ORMDL3
Organism:	Homo sapiens
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ORMDL3.

Description	E-value	Query Range	Subject Range
gi\|109114982 - gi\|109114982\|ref\|XP_001087628.1\| PREDICTED: similar to ORM1-like 3 [Macaca mulatta]	8.0E-74	[1..153]	[183..335]
gi\|114145802, gi... - gi\|45478206\|gb\|AAS66274.1\| LRRGT00183 [Rattus norvegicus], gi\|114145802\|ref\|NP_001041362.1\| ORM1-lik...	3.0E-68	[1..153]	[28..180]
ORML1_MOUSE - ORM1-like protein 1 OS=Mus musculus GN=Ormdl1 PE=2 SV=1	4.0E-65	[1..153]	[1..153]
ENSCJAT00000017378 - null ORML3_BOVIN - ORM1-like protein 3 OS=Bos taurus GN=ORMDL3 PE=2 SV=1 tr\|M3X8M7\|M3X8M7... - ORMDL sphingolipid biosynthesis regulator 3 OS=Felis catus GN=ORMDL3 PE=4 SV=1 gi\|149723870 - gi\|149723870\|ref\|XP_001500871.1\| PREDICTED: similar to ORM1-like 3 isoform 1 [Equus caballus] gi\|73966055, gi\|... - gi\|73966059\|ref\|XP_537651.2\| PREDICTED: similar to ORM1-like 3 isoform 1 [Canis familiaris], gi\|7396...	1.0E-64	[1..153]	[1..153]
ORML3_PONPY - ORM1-like protein 3 - Pongo pygmaeus (Orangutan) ENSMMUT000000064... - null, null ORML3_PONAB - ORM1-like protein 3 OS=Pongo abelii GN=ORMDL3 PE=2 SV=1	1.0E-64	[1..153]	[1..153]
ORML1_XENLA - ORM1-like protein 1 OS=Xenopus laevis GN=ormdl1 PE=2 SV=1	2.0E-64	[1..153]	[1..153]

Back

Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVGTAHSEV NPNTRVMNSR GIWLSYVLAI GLLHIVLLSI PFVSVPVVWT LTNLIHNMGM  60
   61 YIFLHTVKGT PFETPDQGKA RLLTHWEQMD YGVQFTASRK FLTITPIVLY FLTSFYTKYD 120
  121 QIHFVLNTVS LMSVLIPKLP QLHGVRIFGI NKY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	104.040959
Match:	PF04061.5
Description:	No description for PF04061.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits