YRC Public Data Repository - Protein Structure Prediction

Protein:	TAGLN2
Organism:	Homo sapiens
Length:	199 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TAGLN2.

Description	E-value	Query Range	Subject Range
gi\|114560493 - gi\|114560493\|ref\|XP_524929.2\| PREDICTED: similar to KIAA0120 [Pan troglodytes]	8.0E-71	[1..199]	[236..434]
gi\|6563190, gi\|1... - gi\|6563190\|gb\|AAF17189.1\|AF112201_1 neuronal protein NP25 [Homo sapiens], ref\|NP_037391.1\| neuronal ...	2.0E-69	[1..199]	[1..199]
gi\|94365804 - gi\|94365804\|ref\|XP_998748.1\| PREDICTED: similar to transgelin 2 [Mus musculus]	1.0E-68	[1..199]	[53..251]

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Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANRGPAYGL SREVQQKIEK QYDADLEQIL IQWITTQCRK DVGRPQPGRE NFQNWLKDGT  60
   61 VLCELINALY PEGQAPVKKI QASTMAFKQM EQISQFLQAA ERYGINTTDI FQTVDLWEGK 120
  121 NMACVQRTLM NLGGLAVARD DGLFSGDPNW FPKKSKENPR NFSDNQLQEG KNVIGLQMGT 180
  181 NRGASQAGMT GYGMPRQIL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	1wymA
Description:	Solution structure of the CH domain of human transgelin-2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits