YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24041018, gi\|...
Organism:	Homo sapiens
Length:	169 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24041018, gi|....

Description	E-value	Query Range	Subject Range
gi\|109130699 - gi\|109130699\|ref\|XP_001101746.1\| PREDICTED: similar to ubiquitously-expressed transcript isoform 1 [...	4.0E-39	[2..169]	[58..225]
gi\|73951627 - gi\|73951627\|ref\|XP_534790.2\| PREDICTED: similar to prefoldin 5 isoform 1 [Canis familiaris]	1.0E-35	[16..167]	[102..252]
gi\|7209590, gi\|9... - gi\|9910216\|ref\|NP_064415.1\| prefoldin 5 isoform 1 [Mus musculus], gi\|7209590\|dbj\|BAA92269.1\| EIG-1 [...	3.0E-35	[16..167]	[39..189]
UXT_RAT - Protein UXT OS=Rattus norvegicus GN=Uxt PE=2 SV=1 gi\|55741553 - ref\|NP_001006983.1\| similar to ubiquitously-expressed transcript isoform 1 [Rattus norvegicus]	3.0E-34	[13..169]	[1..157]
gi\|1731809 - gi\|1731809\|dbj\|BAA14006.1\| c-myc binding protein [Homo sapiens]	2.0E-33	[16..167]	[12..162]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFPLPTPQE PIMATPPKRR AVEATGEKVL RYETFISDVL QRDLRKVLDH RDKVYEQLAK  60
   61 YLQLRNVIER LQEAKHSELY MQVDLGCNFF VDTVVPDTSR IYVALGYGFF LELTLAEALK 120
  121 FIDRKSSLLT ELSNSLTKDS MNIKAHIHML LEGLRELQGL QNFPEKPHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.0
Match:	1fxkC
Description:	Prefoldin alpha subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits