YRC Public Data Repository - Protein Structure Prediction

Protein:	PEX13
Organism:	Homo sapiens
Length:	403 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEX13.

Description	E-value	Query Range	Subject Range
gi\|57092959 - gi\|57092959\|ref\|XP_531837.1\| PREDICTED: similar to Peroxisomal membrane protein PEX13 (Peroxin-13) [...	380.0	[0..1]	[403..1]
gi\|109102998 - gi\|109102998\|ref\|XP_001115402.1\| PREDICTED: peroxisome biogenesis factor 13 [Macaca mulatta]	378.0	[0..1]	[403..1]
PEX13_BOVIN - Peroxisomal membrane protein PEX13 OS=Bos taurus GN=PEX13 PE=2 SV=1	377.0	[0..1]	[403..1]
gi\|109501111, gi... - ref\|XP_223684.2\| similar to Peroxisomal membrane protein PEX13 (Peroxin-13) [Rattus norvegicus], gi\|...	375.0	[0..1]	[403..1]
gi\|6682845 - gi\|6682845\|dbj\|BAA88906.1\| PEX13 [Cricetulus griseus]	373.0	[0..1]	[403..1]
gi\|26327789 - gi\|26327789\|dbj\|BAC27635.1\| unnamed protein product [Mus musculus]	371.0	[0..1]	[403..1]
gi\|50738259 - gi\|50738259\|ref\|XP_419275.1\| PREDICTED: hypothetical protein [Gallus gallus]	293.0	[0..1]	[403..1]

Back

Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQPPPPPK PWETRRIPGA GPGPGPGPTF QSADLGPTLM TRPGQPALTR VPPPILPRPS  60
   61 QQTGSSSVNT FRPAYSSFSS GYGAYGNSFY GGYSPYS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [98-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGYNGLGYNR LRVDDLPPSR FVQQAEESSR GAFQSIESIV HAFASVSMMM DATFSAVYNS  60
   61 FRAVLDVANH FSRLKIHFTK VFSAFALVRT IRYLYRRLQR MLGLRRGSEN EDLWAESEG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	49.080922
Match:	PF04088.2
Description:	No description for PF04088.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.981	N/A	N/A	a.7.4	Smac/diablo

Predicted Domain #3

Region A:
Residues: [217-403]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVACLGAEDR AATSAKSWPI FLFFAVILGG PYLIWKLLST HSDEVTDSIN WASGEDDHVV  60
   61 ARAEYDFAAV SEEEISFRAG DMLNLALKEQ QPKVRGWLLA SLDGQTTGLI PANYVKILGK 120
  121 RKGRKTVESS KVSKQQQSFT NPTLTKGATV ADSLDEQEAA FESVFVETNK VPVAPDSIGK 180
  181 DGEKQDL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.30103
Match:	1oplA
Description:	Abl tyrosine kinase, SH3 domain; Abl tyrosine kinase; Abelsone tyrosine kinase (abl)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits