YRC Public Data Repository - Protein Structure Prediction

Protein:	CDS1
Organism:	Homo sapiens
Length:	461 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDS1.

Description	E-value	Query Range	Subject Range
gi\|114593861 - gi\|114593861\|ref\|XP_517179.2\| PREDICTED: phosphatidate cytidylyltransferase 1 isoform 2 [Pan troglod...	0.0	[1..461]	[1..461]
gi\|197099885 - gi\|197099885\|ref\|NP_001125832.1\| CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1 ... gi\|55729370 - gi\|55729370\|emb\|CAH91417.1\| hypothetical protein [Pongo abelii]	0.0	[1..461]	[1..461]
gi\|113205588, gi... - gi\|74054295\|gb\|AAZ95510.1\| CDP-diacylglycerol synthase 1 [Sus scrofa], gi\|113205588\|ref\|NP_001037999...	0.0	[1..461]	[1..461]
gi\|1620512 - gi\|1620512\|gb\|AAC50735.1\| CDP-diacylglycerol synthase	0.0	[1..443]	[1..443]
gi\|109074220 - gi\|109074220\|ref\|XP_001104375.1\| PREDICTED: similar to phosphatidate cytidylyltransferase 1 [Macaca ...	0.0	[1..461]	[1..460]
CDS1_MOUSE - Phosphatidate cytidylyltransferase 1 OS=Mus musculus GN=Cds1 PE=1 SV=2 gi\|55250472 - gb\|AAH85995.1\| Unknown (protein for MGC:98012) [Xenopus laevis]	0.0	[1..461]	[1..461]
gi\|74002166 - gi\|74002166\|ref\|XP_544962.2\| PREDICTED: similar to phosphatidate cytidylyltransferase 1 [Canis famil...	0.0	[1..461]	[1..461]
gi\|3219176, gi\|1... - gi\|3219176\|dbj\|BAA28787.1\| CDP-diacylglycerol synthase [Rattus norvegicus], gi\|13676853\|ref\|NP_11252...	0.0	[1..461]	[1..461]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLELRHRGSC PGPREAVSPP HREGEAAGGD HETESTSDKE TDIDDRYGDL DSRTDSDIPE  60
   61 IPPSSDRTPE ILKKALSGLS SRWKNWWIRG ILTLTMISLF FLIIYMGSFM LMLLVLGIQV 120
  121 KCFHEIITIG YRVYHSYDLP WFRTLSWYFL LCVNYFFYGE TVADYFATFV QREEQLQFLI 180
  181 RYHRFISFAL YLAGFCMFVL SLVKKHYRLQ FYMFAW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [217-461]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 THVTLLITVT QSHLVIQNLF EGMIWFLVPI SSVICNDITA YLFGFFFGRT PLIKLSPKKT  60
   61 WEGFIGGFFS TVVFGFIAAY VLSKYQYFVC PVEYRSDVNS FVTECEPSEL FQLQTYSLPP 120
  121 FLKAVLRQER VSLYPFQIHS IALSTFASLI GPFGGFFASG FKRAFKIKDF ANTIPGHGGI 180
  181 MDRFDCQYLM ATFVHVYITS FIRGPNPSKV LQQLLVLQPE QQLNIYKTLK THLIEKGILQ 240
  241 PTLKV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits