YRC Public Data Repository - Protein Structure Prediction

Protein:	SDHB
Organism:	Homo sapiens
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SDHB.

Description	E-value	Query Range	Subject Range
gi\|665925, gi\|92... - gi\|9257242\|ref\|NP_002991.1\| succinate dehydrogenase complex, subunit B, iron sulfur (Ip) [Homo sapie...	1.0E-81	[1..280]	[1..280]
gi\|57044796 - gi\|57044796\|ref\|XP_535392.1\| PREDICTED: similar to Succinate dehydrogenase [ubiquinone] iron-sulfur ...	2.0E-81	[1..280]	[1..280]
gi\|773300 - gi\|773300\|gb\|AAA80581.1\| succinate dehydrogenase iron-protein subunit B gi\|114554306 - gi\|114554306\|ref\|XP_001155328.1\| PREDICTED: succinate dehydrogenase complex, subunit B, iron sulfur ...	2.0E-80	[1..280]	[1..281]
gi\|108998301 - gi\|108998301\|ref\|XP_001088349.1\| PREDICTED: succinate dehydrogenase complex, subunit B, iron sulfur ... gi\|90086177 - gi\|90086177\|dbj\|BAE91641.1\| unnamed protein product [Macaca fascicularis]	7.0E-80	[1..280]	[1..280]
SDHB_PIG - Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Sus scrofa GN=SDHB PE=1 S...	1.0E-79	[1..279]	[1..279]
SDHB_BOVIN - Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Bos taurus GN=SDHB PE=2 S...	6.0E-79	[1..279]	[1..279]
gi\|47222756 - gi\|47222756\|emb\|CAG01723.1\| unnamed protein product [Tetraodon nigroviridis]	3.0E-78	[5..280]	[10..280]
gi\|12833468 - gi\|12833468\|dbj\|BAB22534.1\| unnamed protein product [Mus musculus]	1.0E-77	[1..278]	[1..280]

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Predicted Domain #1

Region A:
Residues: [1-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVVALSLR RRLPATTLGG ACLQASRGAQ TAAATAPRIK KFAIYRWDPD KAGDKPHMQT  60
   61 YEVDLNKCGP MVLDALIKIK NEVDSTLTFR RSCREGICGS CAMNINGGNT LACTRRIDTN 120
  121 LNKVSKIYPL PHMYVIKDLV PDLSNFYAQY KSIEPYLKKK DESQEGKQQY LQSIEEREKL 180
  181 DGLYECILCA CCSTSCPSYW WNGDKYLGPA VLMQAYRWMI DSRDDFTEER LAKLQDPFSL 240
  241 YRCHTIMNCT RTCPKGLNPG KAIAEIKKMM ATYKEKKASV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.39794
Match:	1zoyB
Description:	Crystal Structure of Mitochondrial Respiratory Complex II from porcine heart at 2.4 Angstroms
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits