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View Structure Prediction Details

Protein: APOM
Organism: Homo sapiens
Length: 188 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APOM.

Description E-value Query
Range		 Subject
Range
gi|114606419 - gi|114606419|ref|XP_518354.2| PREDICTED: apolipoprotein M [Pan troglodytes]
 0.0 [1..188] [1..188]
APOM_PONAB - Apolipoprotein M OS=Pongo abelii GN=APOM PE=2 SV=1
APOM_PONPY - Apolipoprotein M - Pongo pygmaeus (Orangutan)
 0.0 [1..188] [1..188]
gi|109070476 - gi|109070476|ref|XP_001112572.1| PREDICTED: apolipoprotein M [Macaca mulatta]
 0.0 [1..188] [1..188]
APOM_PIG - Apolipoprotein M OS=Sus scrofa GN=APOM PE=2 SV=1
 0.0 [1..188] [1..188]
gi|18204576 - gi|18204576|gb|AAH21597.1| Apolipoprotein M [Mus musculus]
 0.0 [1..187] [1..189]
gi|5650615 - gi|5650615|emb|CAB51604.1| G3a protein [Homo sapiens]
 1.0E-99 [1..175] [1..175]
gi|57094349 - gi|57094349|ref|XP_532074.1| PREDICTED: similar to Apolipoprotein M (Apo-M) (ApoM) (NG20 protein) (G...
 1.0E-96 [1..188] [1..188]
APOM_RAT - Apolipoprotein M OS=Rattus norvegicus GN=Apom PE=1 SV=2
 4.0E-96 [1..187] [1..189]

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Predicted Domain #1
Region A:
Residues: [1-188] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHQIWAALL YFYGIILNSI YQCPEHSQLT TLGVDGKEFP EVHLGQWYFI AGAAPTKEEL  60
   61 ATFDPVDNIV FNMAAGSAPM QLHLRATIRM KDGLCVPRKW IYHLTEGSTD LRTEGRPDMK 120
  121 TELFSSSCPG GIMLNETGQG YQRFLLYNRS PHPPEKCVEE FKSLTSCLDS KAFLLTPRNQ 180
  181 EACELSNN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 6.39
Match: 1i04A
Description: Major urinary protein/alpha-2u-globulin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transporter activity 2.0790253220851 bayes_pls_golite062009
lipid transporter activity 2.0622452030785 bayes_pls_golite062009
binding 2.00683433708395 bayes_pls_golite062009
lipid binding 0.974664962702851 bayes_pls_golite062009
substrate-specific transporter activity 0.92165376847661 bayes_pls_golite062009
prostaglandin-D synthase activity 0.151761237567045 bayes_pls_golite062009
protein binding 0.113932394283891 bayes_pls_golite062009
fatty acid transporter activity 0.0209836240489655 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle