YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: POLK
Organism: Homo sapiens
Length: 870 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POLK.

Description E-value Query
Range
Subject
Range
gi|6681760 - gi|6681760|gb|AAF23270.1| DINP protein [Homo sapiens]
0.0 [1..870] [1..870]
gi|114599641, gi... - gi|114599641|ref|XP_001149179.1| PREDICTED: polymerase (DNA directed) kappa isoform 6 [Pan troglodyt...
0.0 [1..870] [1..871]
gi|109077621 - gi|109077621|ref|XP_001105220.1| PREDICTED: polymerase (DNA directed) kappa isoform 5 [Macaca mulatt...
0.0 [1..870] [1..870]
gi|55731632 - gi|55731632|emb|CAH92522.1| hypothetical protein [Pongo abelii]
gi|55731632|emb|... - hypothetical protein [Pongo pygmaeus]
0.0 [1..870] [1..898]
POLK_MOUSE - DNA polymerase kappa OS=Mus musculus GN=Polk PE=1 SV=1
0.0 [1..870] [1..852]
gi|149059108, gi... - gi|149059109|gb|EDM10116.1| polymerase (DNA directed) kappa, isoform CRA_a [Rattus norvegicus], gi|1...
0.0 [1..870] [1..851]
gi|76626431 - gi|76626431|ref|XP_869152.1| PREDICTED: similar to DNA polymerase kappa (DINB protein) (DINP) isofor...
0.0 [2..870] [43..911]

Back

Predicted Domain #1
Region A:
Residues: [1-551]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSTKEKCDS YKDDLLLRMG LNDNKAGMEG LDKEKINKII MEATKGSRFY GNELKKEKQV  60
   61 NQRIENMMQQ KAQITSQQLR KAQLQVDRFA MELEQSRNLS NTIVHIDMDA FYAAVEMRDN 120
  121 PELKDKPIAV GSMSMLSTSN YHARRFGVRA AMPGFIAKRL CPQLIIVPPN FDKYRAVSKE 180
  181 VKEILADYDP NFMAMSLDEA YLNITKHLEE RQNWPEDKRR YFIKMGSSVE NDNPGKEVNK 240
  241 LSEHERSISP LLFEESPSDV QPPGDPFQVN FEEQNNPQIL QNSVVFGTSA QEVVKEIRFR 300
  301 IEQKTTLTAS AGIAPNTMLA KVCSDKNKPN GQYQILPNRQ AVMDFIKDLP IRKVSGIGKV 360
  361 TEKMLKALGI ITCTELYQQR ALLSLLFSET SWHYFLHISL GLGSTHLTRD GERKSMSVER 420
  421 TFSEINKAEE QYSLCQELCS ELAQDLQKER LKGRTVTIKL KNVNFEVKTR ASTVSSVVST 480
  481 AEEIFAIAKE LLKTEIDADF PHPLRLRLMG VRISSFPNEE DRKHQQRSII GFLQAGNQAL 540
  541 SATECTLEKT D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 142.0
Match: 2oh2A
Description: No description for 2oh2A was found.

Predicted Domain #2
Region A:
Residues: [552-692]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDKFVKPLEM SHKKSFFDKK RSERKWSHQD TFKCEAVNKQ SFQTSQPFQV LKKKMNENLE  60
   61 ISENSDDCQI LTCPVCFRAQ GCISLEALNK HVDECLDGPS ISENFKMFSC SHVSATKVNK 120
  121 KENVPASSLC EKQDYEAHPK I

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [693-870]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KEISSVDCIA LVDTIDNSSK AESIDALSNK HSKEECSSLP SKSFNIEHCH QNSSSTVSLE  60
   61 NEDVGSFRQE YRQPYLCEVK TGQALVCPVC NVEQKTSDLT LFNVHVDVCL NKSFIQELRK 120
  121 DKFNPVNQPK ESSRSTGSSS GVQKAVTRTK RPGLMTKYST SKKIKPNNPK HTLDIFFK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle