YRC Public Data Repository - Protein Structure Prediction

Protein:	TWF2
Organism:	Homo sapiens
Length:	349 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TWF2.

Description	E-value	Query Range	Subject Range
gi\|48145581 - gi\|48145581\|emb\|CAG33013.1\| PTK9L [Homo sapiens]	0.0	[1..349]	[1..349]
TWF2_MOUSE - Twinfilin-2 OS=Mus musculus GN=Twf2 PE=1 SV=1 gi\|117616970, gi... - gi\|117617016\|gb\|ABK42526.1\| SGK396 [synthetic construct], gi\|117616970\|gb\|ABK42503.1\| A6r [synthetic...	0.0	[1..349]	[1..349]
gi\|149018687, gi... - gi\|207028435\|ref\|NP_001128710.1\| hypothetical protein LOC684352 [Rattus norvegicus], gi\|165971615\|gb...	0.0	[1..349]	[1..349]
gi\|62901874 - gi\|62901874\|gb\|AAY18888.1\| tyrosine kinase 9-like, A6-related protein [synthetic construct]	0.0	[2..349]	[26..373]
gi\|73985335 - gi\|73985335\|ref\|XP_859685.1\| PREDICTED: similar to twinfilin-like protein isoform 5 [Canis familiari...	0.0	[1..349]	[1..349]
TWF2_CHICK - Twinfilin-2 OS=Gallus gallus GN=TWF2 PE=1 SV=1	0.0	[1..349]	[1..349]

Back

Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHQTGIHAT EELKEFFAKA RAGSVRLIKV VIEDEQLVLG ASQEPVGRWD QDYDRAVLPL  60
   61 LDAQQPCYLL YRLDSQNAQG FEWLFLAWSP DNSPVRLKML YAATRATVKK EFGGGHIKDE 120
  121 LFGTVKDDLS FAGYQKHLSS CA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	2vacA
Description:	No description for 2vacA was found.

Predicted Domain #2

Region A:
Residues: [143-349]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APAPLTSAER ELQQIRINEV KTEISVESKH QTLQGLAFPL QPEAQRALQQ LKQKMVNYIQ  60
   61 MKLDLERETI ELVHTEPTDV AQLPSRVPRD AARYHFFLYK HTHEGDPLES VVFIYSMPGY 120
  121 KCSIKERMLY SSCKSRLLDS VEQDFHLEIA KKIEIGDGAE LTAEFLYDEV HPKQHAFKQA 180
  181 FAKPKGPGGK RGHKRLIRGP GENGDDS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.0
Match:	2d8bA
Description:	No description for 2d8bA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits