YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPS23
Organism:	Homo sapiens
Length:	190 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPS23.

Description	E-value	Query Range	Subject Range
gi\|114669508 - gi\|114669508\|ref\|XP_511903.2\| PREDICTED: mitochondrial ribosomal protein S23 [Pan troglodytes]	2.0E-87	[1..190]	[1..190]
gi\|109114474 - gi\|109114474\|ref\|XP_001105899.1\| PREDICTED: similar to mitochondrial ribosomal protein S23 [Macaca m...	3.0E-83	[1..190]	[1..190]
RT23_MOUSE - 28S ribosomal protein S23, mitochondrial OS=Mus musculus GN=Mrps23 PE=1 SV=1	8.0E-83	[1..190]	[1..177]
gi\|109491616, gi... - ref\|XP_340875.1\| similar to Mrps23 protein [Rattus norvegicus], gi\|109491616\|ref\|XP_001081199.1\| PRE...	8.0E-78	[1..190]	[1..171]
gi\|73966669 - gi\|73966669\|ref\|XP_852355.1\| PREDICTED: similar to mitochondrial ribosomal protein S23 [Canis famili...	2.0E-77	[1..190]	[191..380]
RT23_BOVIN - 28S ribosomal protein S23, mitochondrial OS=Bos taurus GN=MRPS23 PE=1 SV=1	1.0E-75	[1..190]	[1..190]
gi\|4929745 - gi\|4929745\|gb\|AAD34133.1\|AF151896_1 CGI-138 protein [Homo sapiens]	4.0E-69	[1..137]	[1..137]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSRLETVG SIFSRTRDLV RAGVLKEKPL WFDVYDAFPP LREPVFQRPR VRYGKAKAPI  60
   61 QDIWYHEDRI RAKFYSVYGS GQRAFDLFNP NFKSTCQRFV EKYTELQKLG ETDEEKLFVE 120
  121 TGKALLAEGV ILRRVGEART QHGGSHVSRK SEHLSVRPQT ALEENETQKE VPQDQHLEAP 180
  181 ADQSKGLLPP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits