YRC Public Data Repository - Protein Structure Prediction

Protein:	TPD52L1
Organism:	Homo sapiens
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TPD52L1.

Description	E-value	Query Range	Subject Range
gi\|114609317 - gi\|114609317\|ref\|XP_518724.2\| PREDICTED: similar to D53 [Pan troglodytes]	1.0E-76	[1..204]	[108..316]
gi\|109072961 - gi\|109072961\|ref\|XP_001107364.1\| PREDICTED: similar to Tumor protein D53 (hD53) (Tumor protein D52-l...	2.0E-75	[1..204]	[108..316]
gi\|73946315 - gi\|73946315\|ref\|XP_855485.1\| PREDICTED: similar to Tumor protein D53 (hD53) (Tumor protein D52-like ...	2.0E-75	[8..204]	[102..298]
gi\|109460590 - gi\|109460590\|ref\|XP_001057883.1\| PREDICTED: similar to Tumor protein D53 (mD53) (Tumor protein D52-l...	4.0E-75	[1..204]	[86..289]
gi\|182887953 - gi\|182887953\|gb\|AAI60227.1\| Tumor protein D52-like 1 [synthetic construct] TPD53_MOUSE - Tumor protein D53 OS=Mus musculus GN=Tpd52l1 PE=1 SV=1	3.0E-70	[1..204]	[1..204]
gi\|115496772, gi... - gi\|115496772\|ref\|NP_001069501.1\| tumor protein D52-like 1 [Bos taurus], gi\|111307582\|gb\|AAI20447.1\| ...	2.0E-68	[1..204]	[1..209]
ENSMMUT000000044... - null, null gi\|51173744 - gi\|51173744\|ref\|NP_001003395.1\| tumor protein D52-like 1 isoform 2 [Homo sapiens]	2.0E-60	[30..204]	[1..175]
TPD53_CHICK - Tumor protein D53 homolog OS=Gallus gallus GN=TPD52L1 PE=2 SV=1	3.0E-59	[1..204]	[1..210]
gi\|1695748 - gi\|1695748\|emb\|CAA69034.1\| gag R10 [Coturnix coturnix]	3.0E-58	[7..200]	[52..249]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAQAQGLLE TEPLQGTDED AVASADFSSM LSEEEKEELK AELVQLEDEI TTLRQVLSAK  60
   61 ERHLVEIKQK LGMNLMNELK QNFSKSWHDM QTTTAYKKTH ETLSHAGQKA TAAFSNVGTA 120
  121 ISKKFGDMSY SIRHSISMPA MRNSPTFKSF EERVETTVTS LKTKVGGTNP NGGSFEEVLS 180
  181 STAHASAQSL AGGSRRTKEE ELQC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	123.585027
Match:	PF04201.6
Description:	No description for PF04201.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits