YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPS2
Organism:	Homo sapiens
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPS2.

Description	E-value	Query Range	Subject Range
gi\|114627489 - gi\|114627489\|ref\|XP_520354.2\| PREDICTED: mitochondrial ribosomal protein S2 isoform 3 [Pan troglodyt...	2.0E-81	[1..296]	[1..296]
gi\|67156412 - gi\|67156412\|ref\|ZP_00418005.1\| Ribosomal protein S2, bacterial and organelle form [Azotobacter vinel... gi\|67156412, gi\|... - gi\|67156412\|ref\|ZP_00418005.1\| Ribosomal protein S2, bacterial and organelle form [Azotobacter vinel...	1.0E-79	[1..264]	[320..606]
gi\|26341776, gi\|... - gi\|31543265\|ref\|NP_536700.2\| mitochondrial ribosomal protein S2 [Mus musculus], gi\|26341776\|dbj\|BAC3...	6.0E-77	[1..295]	[1..290]
gi\|109109795 - gi\|109109795\|ref\|XP_001097716.1\| PREDICTED: mitochondrial ribosomal protein S2 isoform 2 [Macaca mul...	1.0E-75	[1..296]	[1..296]
gi\|109467959, gi... - ref\|XP_342399.1\| similar to mitochondrial ribosomal protein S2 [Rattus norvegicus], gi\|109467959\|ref...	1.0E-73	[1..295]	[1..290]
gi\|73989790 - gi\|73989790\|ref\|XP_860646.1\| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa laminin...	3.0E-72	[66..293]	[1..221]

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Predicted Domain #1

Region A:
Residues: [1-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSSAALPR ILGAGARAPS RWLGFLGKAT PRPARPSRRT LGSATALMIR ESEDSTDFND  60
   61 KILNEPLKHS DFFNVKELFS VRSLFDARVH LGHKAGCRHR FMEPYIFGSR LDHDIIDLEQ 120
  121 TATHLQLALN FTAHMAYRKG IILFISRNRQ FSYLIENMAR DCGEYAHTRY FRGGMLTNAR 180
  181 LLFGPTVRLP DLIIFLHTLN NIFEPHVAVR DAAKMNIPTV GIVDTNCNPC LITYPVPGND 240
  241 DSPLAVHLYC RLFQTAITRA KEKRQQVEAL YRLQGQKEPG DQGPAHPPGA DMSHSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.221849
Match:	1vs5B
Description:	No description for 1vs5B was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.68569821712377	bayes_pls_golite062009
structural molecule activity	9.23086340425923	bayes_pls_golite062009
RNA binding	0.825542354503353	bayes_pls_golite062009
binding	0.775544224160057	bayes_pls_golite062009
nucleic acid binding	0.588158477256084	bayes_pls_golite062009
protein binding	0.156148644279823	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: