YRC Public Data Repository - Protein Structure Prediction

Protein:	POLR3K
Organism:	Homo sapiens
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POLR3K.

Description	E-value	Query Range	Subject Range
gi\|73959879 - gi\|73959879\|ref\|XP_854405.1\| PREDICTED: similar to DNA-directed RNA polymerases III 12.5 kDa polypep...	146.0	[0..1]	[108..25]
gi\|51980360 - gb\|AAH82176.1\| Unknown (protein for MGC:98608) [Xenopus laevis] gi\|114660088 - gi\|114660088\|ref\|XP_001150299.1\| PREDICTED: hypothetical protein [Pan troglodytes] gi\|160904110 - gi\|160904110\|gb\|ABX52097.1\| polymerase III polypeptide K, 12.3 kDa (predicted) [Papio anubis] RPC10_MOUSE - DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus GN=Polr3k PE=3 SV=1 gi\|167427355 - gi\|167427355\|gb\|ABZ80330.1\| DNA directed RNA polymerase III polypeptide K (predicted) [Callithrix ja... gi\|126335251 - gi\|126335251\|ref\|XP_001364724.1\| PREDICTED: hypothetical protein [Monodelphis domestica] gi\|169246090 - gi\|169246090\|gb\|ACA51066.1\| DNA directed RNA polymerase III polypeptide K (predicted) [Callicebus mo... CCDS10395.1_1 - null gi\|183396438 - gi\|183396438\|gb\|ACC62113.1\| DNA directed RNA polymerase III polypeptide K (predicted) [Rhinolophus f... gi\|58477408, gi\|... - gi\|62646566\|ref\|XP_575306.1\| PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide K...	139.0	[0..1]	[108..1]
POLR3K - polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa	137.0	[0..1]	[108..1]
gi\|50540172, gi\|... - gi\|50540172\|ref\|NP_001002553.1\| polymerase (RNA) III (DNA directed) polypeptide K [Danio rerio], gi\|...	137.0	[0..1]	[108..1]
gi\|148237221, gi... - gi\|38511445\|gb\|AAH61683.1\| MGC68582 protein [Xenopus laevis], gi\|148237221\|ref\|NP_001083658.1\| DNA-d...	137.0	[0..1]	[108..1]
gi\|21956651 - gi\|21956651\|gb\|AAM83406.1\| POLR3K [Sphoeroides nephelus]	137.0	[0..1]	[108..1]
gi\|47220062 - gi\|47220062\|emb\|CAG12210.1\| unnamed protein product [Tetraodon nigroviridis]	136.0	[0..1]	[108..1]
gi\|62751522, gi\|... - gi\|89266864\|emb\|CAJ83854.1\| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Xenopus tro...	135.0	[0..1]	[108..1]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLFCPGCGN GLIVEEGQRC HRFACNTCPY VHNITRKVTN RKYPKLKEVD DVLGGAAAWE  60
   61 NVDSTAESCP KCEHPRAYFM QLQTRSADEP MTTFYKCCNA QCGHRWRD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	1i3qI
Description:	RBP9 subunit of RNA polymerase II
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits