YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPS28
Organism:	Homo sapiens
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPS28.

Description	E-value	Query Range	Subject Range
gi\|109466315 - gi\|109466315\|ref\|XP_001054178.1\| PREDICTED: similar to Mitochondrial 28S ribosomal protein S28 (S28m...	7.0E-86	[1..187]	[1..187]
RT28_MOUSE - 28S ribosomal protein S28, mitochondrial OS=Mus musculus GN=Mrps28 PE=1 SV=1	2.0E-85	[1..187]	[1..186]
gi\|62897699 - gi\|62897699\|dbj\|BAD96789.1\| mitochondrial ribosomal protein S28 variant [Homo sapiens]	3.0E-83	[1..187]	[1..187]
gi\|109086776 - gi\|109086776\|ref\|XP_001090591.1\| PREDICTED: mitochondrial ribosomal protein S28 [Macaca mulatta]	1.0E-81	[1..187]	[1..186]
gi\|114620588 - gi\|114620588\|ref\|XP_519824.2\| PREDICTED: mitochondrial ribosomal protein S28 isoform 2 [Pan troglody...	3.0E-81	[1..187]	[1..187]
RT28_BOVIN - 28S ribosomal protein S28, mitochondrial OS=Bos taurus GN=MRPS28 PE=1 SV=2	1.0E-71	[1..186]	[1..187]
gi\|57107797 - gi\|57107797\|ref\|XP_535109.1\| PREDICTED: similar to Mitochondrial 28S ribosomal protein S28 (S28mt) (...	4.0E-68	[1..180]	[1..181]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALCRTRAV AAESHFLRVF LFFRPFRGVG TESGSESGSS NAKEPKTRAG GFASALERHS  60
   61 ELLQKVEPLQ KGSPKNVESF ASMLRHSPLT QMGPAKDKLV IGRIFHIVEN DLYIDFGGKF 120
  121 HCVCRRPEVD GEKYQKGTRV RLRLLDLELT SRFLGATTDT TVLEANAVLL GIQESKDSRS 180
  181 KEEHHEK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits