YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL10A
Organism:	Homo sapiens
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL10A.

Description	E-value	Query Range	Subject Range
gi\|114607013 - gi\|114607013\|ref\|XP_518425.2\| PREDICTED: similar to ribosomal protein L10a [Pan troglodytes]	3.0E-68	[4..217]	[144..357]
gi\|109070853 - gi\|109070853\|ref\|XP_001111950.1\| PREDICTED: similar to ribosomal protein L10a [Macaca mulatta]	4.0E-68	[4..217]	[138..351]
RL10A_MACFA - 60S ribosomal protein L10a OS=Macaca fascicularis GN=RPL10A PE=2 SV=3	9.0E-65	[1..217]	[1..217]
gi\|73972658 - gi\|73972658\|ref\|XP_851596.1\| PREDICTED: similar to ribosomal protein L10a isoform 3 [Canis familiari...	2.0E-64	[1..217]	[1..217]
gi\|74150338 - gi\|74150338\|dbj\|BAE32219.1\| unnamed protein product [Mus musculus]	3.0E-64	[1..217]	[1..217]
gi\|531171 - gi\|531171\|gb\|AAA86463.1\| Csa-19	4.0E-64	[1..217]	[1..217]
gi\|61365818, gi\|... - gi\|61371360\|gb\|AAX43654.1\| ribosomal protein L10a [synthetic construct], gi\|61365818\|gb\|AAX42768.1\| ...	5.0E-64	[1..217]	[1..217]
gi\|48835066 - ref\|ZP_00292068.1\| COG0081: Ribosomal protein L1 [Thermobifida fusca] RL1_THEFY - 50S ribosomal protein L1 OS=Thermobifida fusca (strain YX) GN=rplA PE=3 SV=1	8.0E-64	[2..216]	[11..223]
gi\|68365166 - gi\|68365166\|ref\|XP_696357.1\| PREDICTED: similar to Ribosomal protein L10a [Danio rerio]	1.0E-63	[3..217]	[18..232]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKVSRDTL YEAVREVLHG NQRKRRKFLE TVELQISLKN YDPQKDKRFS GTVRLKSTPR  60
   61 PKFSVCVLGD QQHCDEAKAV DIPHMDIEAL KKLNKNKKLV KKLAKKYDAF LASESLIKQI 120
  121 PRILGPGLNK AGKFPSLLTH NENMVAKVDE VKSTIKFQMK KVLCLAVAVG HVKMTDDELV 180
  181 YNIHLAVNFL VSLLKKNWQN VRALYIKSTM GKPQRLY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.0
Match:	1s1iA
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits