| Protein: | NCKAP1 |
| Organism: | Homo sapiens |
| Length: | 1128 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NCKAP1.
| Description | E-value | Query Range |
Subject Range |
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1986.0 | [0..1] | [1128..218] |
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1982.0 | [0..1] | [1128..255] |
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1973.0 | [0..1] | [1128..195] |
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1948.0 | [0..1] | [1128..1] |
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1947.0 | [0..1] | [1128..38] |
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1946.0 | [0..1] | [1128..1] |
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1916.0 | [0..1] | [1128..1] |
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1882.0 | [0..36] | [1128..35] |
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Region A: Residues: [1-244] |
1 11 21 31 41 51
| | | | | |
1 MSRSVLQPSQ QKLAEKLTIL NDRGVGMLTR LYNIKKACGD PKAKPSYLID KNLESAVKFI 60
61 VRKFPAVETR NNNQQLAQLQ KEKSEILKNL ALYYFTFVDV MEFKDHVCEL LNTIDVCQVF 120
121 FDITVNFDLT KNYLDLIITY TTLMILLSRI EERKAIIGLY NYAHEMTHGA SDREYPRLGQ 180
181 MIVDYENPLK KMMEEFVPHS KSLSDALISL QMVYPRRNLS ADQWRNAQLL SLISAPSTML 240
241 NPAQ
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [245-393] |
1 11 21 31 41 51
| | | | | |
1 SDTMPCEYLS LDAMEKWIIF GFILCHGILN TDATALNLWK LALQSSSCLS LFRDEVFHIH 60
61 KAAEDLFVNI RGYNKRINDI RECKEAAVSH AGSMHRERRK FLRSALKELA TVLSDQPGLL 120
121 GPKALFVFMA LSFARDEIIW LLRHADNMP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.590 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.452 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.411 | a.25.1 | Ferritin-like |
| View | Download | 0.401 | c.36.1 | Thiamin diphosphate-binding fold (THDP-binding) |
| View | Download | 0.393 | d.210.1 | Argininosuccinate synthetase, C-terminal domain |
| View | Download | 0.392 | a.47.2 | t-snare proteins |
| View | Download | 0.377 | a.26.1 | 4-helical cytokines |
| View | Download | 0.373 | a.26.1 | 4-helical cytokines |
| View | Download | 0.360 | a.75.1 | Ribosomal protein S7 |
| View | Download | 0.348 | a.63.1 | Apolipophorin-III |
| View | Download | 0.296 | a.1.1 | Globin-like |
| View | Download | 0.254 | a.126.1 | Serum albumin-like |
| View | Download | 0.245 | c.36.1 | Thiamin diphosphate-binding fold (THDP-binding) |
|
Region A: Residues: [394-508] |
1 11 21 31 41 51
| | | | | |
1 KKSADDFIDK HIAELIFYME ELRAHVRKYG PVMQRYYVQY LSGFDAVVLN ELVQNLSVCP 60
61 EDESIIMSSF VNTMTSLSVK QVEDGEVFDF RGMRLDWFRL QAYTSVSKAS LGLAD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.979 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.976 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.954 | a.29.16 | Description not found. |
| View | Download | 0.927 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.920 | a.24.3 | Cytochromes |
| View | Download | 0.910 | a.24.18 | Description not found. |
| View | Download | 0.900 | a.24.3 | Cytochromes |
| View | Download | 0.786 | a.24.3 | Cytochromes |
| View | Download | 0.773 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
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Region A: Residues: [509-653] |
1 11 21 31 41 51
| | | | | |
1 HRELGKMMNT IIFHTKMVDS LVEMLVETSD LSIFCFYSRA FEKMFQQCLE LPSQSRYSIA 60
61 FPLLCTHFMS CTHELCPEER HHIGDRSLSL CNMFLDEMAK QARNLITDIC TEQCTLSDQL 120
121 LPKHCAKTIS QAVNKKSKKQ TGKKG
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.869 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.862 | a.215.1 | Description not found. |
| View | Download | 0.786 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.783 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.767 | a.29.8 | Description not found. |
| View | Download | 0.741 | a.25.1 | Ferritin-like |
| View | Download | 0.690 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.652 | a.74.1 | Cyclin-like |
| View | Download | 0.571 | a.118.8 | TPR-like |
| View | Download | 0.505 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.392 | a.126.1 | Serum albumin-like |
| View | Download | 0.349 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.345 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.321 | d.110.4 | SNARE-like |
|
Region A: Residues: [654-817] |
1 11 21 31 41 51
| | | | | |
1 EPEREKPGVE SMRKNRLVVT NLDKLHTALS ELCFSINYVP NMVVWEHTFT PREYLTSHLE 60
61 IRFTKSIVGM TMYNQATQEI AKPSELLTSV RAYMTVLQSI ENYVQIDITR VFNNVLLQQT 120
121 QHLDSHGEPT ITSLYTNWYL ETLLRQVSNG HIAYFPAMKA FVNL
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [818-933] |
1 11 21 31 41 51
| | | | | |
1 PTENELTFNA EEYSDISEMR SLSELLGPYG MKFLSESLMW HISSQVAELK KLVVENVDVL 60
61 TQMRTSFDKP DQMAALFKRL SSVDSVLKRM TIIGVILSFR SLAQEALRDV LSYHIP
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.977 | a.47.1 | STAT |
| View | Download | 0.949 | a.2.14 | Description not found. |
| View | Download | 0.946 | a.47.1 | STAT |
| View | Download | 0.938 | a.2.7 | tRNA-binding arm |
| View | Download | 0.935 | a.2.7 | tRNA-binding arm |
| View | Download | 0.924 | a.2.7 | tRNA-binding arm |
| View | Download | 0.920 | a.2.7 | tRNA-binding arm |
| View | Download | 0.878 | a.47.2 | t-snare proteins |
| View | Download | 0.855 | d.67.3 | Ribosome recycling factor, RRF |
| View | Download | 0.778 | d.67.3 | Ribosome recycling factor, RRF |
| View | Download | 0.761 | d.67.3 | Ribosome recycling factor, RRF |
| View | Download | 0.738 | a.7.8 | GAT domain |
| View | Download | 0.725 | d.67.3 | Ribosome recycling factor, RRF |
| View | Download | 0.725 | d.67.3 | Ribosome recycling factor, RRF |
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Region A: Residues: [934-1128] |
1 11 21 31 41 51
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1 FLVSSIEDFK DHIPRETDMK VAMNVYELSS AAGLPCEIDP ALVVALSSQK SENISPEEEY 60
61 KIACLLMVFV AVSLPTLASN VMSQYSPAIE GHCNNIHCLA KAINQIAAAL FTIHKGSIED 120
121 RLKEFLALAS SSLLKIGQET DKTTTRNRES VYLLLDMIVQ ESPFLTMDLL ESCFPYVLLR 180
181 NAYHAVYKQS VTSSA
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
