YRC Public Data Repository - Protein Structure Prediction

Protein:	SNAPIN
Organism:	Homo sapiens
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNAPIN.

Description	E-value	Query Range	Subject Range
gi\|114559741 - gi\|114559741\|ref\|XP_001139135.1\| PREDICTED: similar to snapin [Pan troglodytes]	241.0	[0..1]	[136..77]
gi\|60652801, gi\|... - gi\|60652801\|gb\|AAX29095.1\| SNAP-associated protein [synthetic construct], gi\|60652799\|gb\|AAX29094.1\|...	232.0	[0..1]	[136..1]
CCDS1049.1_1 - null gi\|109016416 - gi\|109016416\|ref\|XP_001111730.1\| PREDICTED: similar to SNARE-associated protein Snapin (Synaptosomal...	230.0	[0..1]	[136..1]
gi\|74149154 - gi\|74149154\|dbj\|BAE22381.1\| unnamed protein product [Mus musculus]	227.0	[0..1]	[136..1]
gi\|134085838, gi... - gi\|61839259\|ref\|XP_589227.1\| PREDICTED: similar to snapin [Bos taurus], gi\|134085838\|ref\|NP_00107687...	226.0	[0..1]	[136..1]
gi\|57089637 - gi\|57089637\|ref\|XP_547578.1\| PREDICTED: similar to SNARE-associated protein Snapin (Synaptosomal-ass...	205.0	[0..14]	[136..14]
gi\|187608680, gi... - gi\|187608680\|ref\|NP_001120066.1\| hypothetical protein LOC100145066 [Xenopus (Silurana) tropicalis], ... gi\|148228503, gi... - gi\|56269188\|gb\|AAH87435.1\| LOC496040 protein [Xenopus laevis], gi\|148228503\|ref\|NP_001088776.1\| hypo...	176.0	[0..21]	[136..6]
gi\|145337947, gi... - gi\|94734471\|emb\|CAK05468.1\| novel protein similar to vertebrate SNAP-associated protein (SNAPAP) [Da...	163.0	[0..16]	[136..7]
gi\|195576129, gi... - gi\|195576129\|ref\|XP_002077929.1\| GD22807 [Drosophila simulans], gi\|194189938\|gb\|EDX03514.1\| GD22807 ... gi\|190660324, gi... - gi\|194854974\|ref\|XP_001968457.1\| GG24495 [Drosophila erecta], gi\|190660324\|gb\|EDV57516.1\| GG24495 [D... snapin-PA - The gene snapin is referred to in FlyBase by the symbol Dmel\snapin (CG9958, FBgn0031455). It is a p... gi\|195470851, gi... - gi\|195470851\|ref\|XP_002087720.1\| GE15040 [Drosophila yakuba], gi\|194173821\|gb\|EDW87432.1\| GE15040 [D...	152.0	[0..19]	[128..21]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAGSAAVS GAGTPVAGPT GRDLFAEGLL EFLRPAVQQL DSHVHAVRES QVELREQIDN  60
   61 LATELCRINE DQKVALDLDP YVKKLLNARR RVVLVNNILQ NAQERLRRLN HSVAKETARR 120
  121 RAMLDSGIYP PGSPGK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.455	a.118.9	ENTH/VHS domain
View	Download	0.422	a.118.9	ENTH/VHS domain
View	Download	0.404	a.118.8	TPR-like
View	Download	0.401	a.25.1	Ferritin-like
View	Download	0.351	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.337	a.47.3	Description not found.
View	Download	0.327	d.108.1	Acyl-CoA N-acyltransferases (Nat)
View	Download	0.315	a.25.1	Ferritin-like
View	Download	0.290	a.1.1	Globin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits