YRC Public Data Repository - Protein Structure Prediction

Protein:	RCE1
Organism:	Homo sapiens
Length:	329 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RCE1.

Description	E-value	Query Range	Subject Range
gi\|114638802 - gi\|114638802\|ref\|XP_508581.2\| PREDICTED: prenyl protein peptidase RCE1 isoform 3 [Pan troglodytes] gi\|109105244 - gi\|109105244\|ref\|XP_001107995.1\| PREDICTED: prenyl protein peptidase RCE1 isoform 2 [Macaca mulatta]	7.0E-70	[1..329]	[1..329]
gi\|73983617 - gi\|73983617\|ref\|XP_540826.2\| PREDICTED: similar to CAAX prenyl protease 2 (Prenyl protein-specific e...	9.0E-70	[1..329]	[1..329]
FACE2_MOUSE - CAAX prenyl protease 2 OS=Mus musculus GN=Rce1 PE=2 SV=1	1.0E-69	[1..329]	[1..329]
gi\|76658004 - gi\|76658004\|ref\|XP_587964.2\| PREDICTED: similar to CAAX prenyl protein protease RCE1 isoform 1 [Bos ...	2.0E-69	[1..329]	[1..329]
gi\|189181652, gi... - gi\|34861410\|ref\|XP_219685.2\| PREDICTED: similar to Ras and a-factor-converting enzyme 1 homolog [Rat...	2.0E-69	[1..329]	[1..329]
gi\|112180737 - gi\|112180737\|gb\|AAH52622.1\| RCE1 protein [Homo sapiens]	2.0E-46	[93..329]	[93..329]
gi\|49257606, gi\|... - gi\|49257606\|gb\|AAH74218.1\| MGC83398 protein [Xenopus laevis], gi\|147905997\|ref\|NP_001086121.1\| MGC83...	2.0E-45	[27..329]	[7..308]
gi\|62858955, gi\|... - gi\|62858955\|ref\|NP_001016246.1\| prenyl protein peptidase RCE1 [Xenopus (Silurana) tropicalis], gi\|21...	3.0E-45	[27..329]	[7..308]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALGGDGLR LLSVSRPERP PESAALGGLG PGLCCWVSVF SCLSLACSYV GSLYVWKSEL  60
   61 PRDHPAVIKR RFTSVLVVSS LSPLCVLLWR ELTGIQPGTS LLTLMGFRLE GIFPAALLPL 120
  121 LLTMILFLGP LMQLSMDCPC DLAD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [145-329]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLKVVLAPRS WARCLTDMRW LRNQVIAPLT EELVFRACML PMLAPCMGLG PAVFTCPLFF  60
   61 GVAHFHHIIE QLRFRQSSVG NIFLSAAFQF SYTAVFGAYT AFLFIRTGHL IGPVLCHSFC 120
  121 NYMGFPAVCA ALEHPQRRPL LAGYALGVGL FLLLLQPLTD PKLYGSLPLC VLLERAGDSE 180
  181 APLCS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.154902
Match:	PF02517.7
Description:	No description for PF02517.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits