YRC Public Data Repository - Protein Structure Prediction

Protein:	PIGC
Organism:	Homo sapiens
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PIGC.

Description	E-value	Query Range	Subject Range
gi\|30584777, gi\|... - gi\|60653763\|gb\|AAX29575.1\| phosphatidylinositol glycan class C [synthetic construct], gi\|60653761\|gb...	0.0	[1..297]	[1..297]
gi\|114565452, gi... - gi\|114565458\|ref\|XP_001147637.1\| PREDICTED: similar to phosphatidylinositol-glycan-class C (PIG-C) i...	0.0	[1..297]	[1..297]
gi\|109019529, gi... - gi\|109019529\|ref\|XP_001100645.1\| PREDICTED: phosphatidylinositol glycan, class C isoform 3 [Macaca m... CCDS1302.1_1 - null	0.0	[1..297]	[1..297]
gi\|2547042, gi\|1... - gi\|2547042\|dbj\|BAA22866.1\| PIGC [Homo sapiens], gi\|119611334\|gb\|EAW90928.1\| phosphatidylinositol gly...	0.0	[1..297]	[1..297]
gi\|57088997 - gi\|57088997\|ref\|XP_537194.1\| PREDICTED: similar to Phosphatidylinositol N-acetylglucosaminyltransfer...	0.0	[1..297]	[1..297]
PIGC_BOVIN - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Bos taurus GN=PIGC PE=2 SV=1	0.0	[1..297]	[1..297]
PIGC_MOUSE - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Mus musculus GN=Pigc PE=2 SV=1	0.0	[1..297]	[1..297]
PIGC_RAT - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Rattus norvegicus GN=Pigc PE=2 SV=...	0.0	[1..297]	[1..297]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYAQPVTNTK EVKWQKVLYE RQPFPDNYVD RRFLEELRKN IHARKYQYWA VVFESSVVIQ  60
   61 QLCSVCVFVV IWWYMDEGLL APHWLLGTGL ASSLIGYVLF DLIDGGEGRK KSGQTRWADL 120
  121 KSALVFITFT YGFSPVLKTL TE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [143-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVSTDTIYAM SVFMLLGHLI FFDYGANAAI VSSTLSLNMA IFASVCLASR LPRSLHAFIM  60
   61 VTFAIQIFAL WPMLQKKLKA CTPRSYVGVT LLFAFSAVGG LLSISAVGAV LFALLLMSIS 120
  121 CLCPFYLIRL QLFKENIHGP WDEAEIKEDL SRFLS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits