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View Structure Prediction Details

Protein: RPL12
Organism: Homo sapiens
Length: 165 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL12.

Description E-value Query
Range
Subject
Range
gi|114626854 - gi|114626854|ref|XP_528436.2| PREDICTED: similar to 60S ribosomal protein L12 [Pan troglodytes]
7.0E-71 [1..165] [215..379]
gi|109112216 - gi|109112216|ref|XP_001095922.1| PREDICTED: similar to 60S ribosomal protein L12 [Macaca mulatta]
8.0E-69 [1..165] [115..279]
gi|94369912, gi|... - gi|94371270|ref|XP_996671.1| PREDICTED: similar to 60S ribosomal protein L12 [Mus musculus], gi|9436...
6.0E-68 [1..165] [33..197]
gi|62088522 - gi|62088522|dbj|BAD92708.1| ribosomal protein L12 variant [Homo sapiens]
2.0E-67 [1..165] [33..197]
gi|45268981 - gi|45268981|gb|AAS55903.1| 60S ribosomal protein L12 [Sus scrofa]
3.0E-67 [1..165] [27..191]

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Predicted Domain #1
Region A:
Residues: [1-165]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKFDPNEI KVVYLRCTGG EVGATSALAP KIGPLGLSPK KVGDDIAKAT GDWKGLRITV  60
   61 KLTIQNRQAQ IEVVPSASAL IIKALKEPPR DRKKQKNIKH SGNITFDEIV NIARQMRHRS 120
  121 LARELSGTIK EILGTAQSVG CNVDGRHPHD IIDDINSGAV ECPAS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.154902
Match: 1s1iK
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle