YRC Public Data Repository - Protein Structure Prediction

Protein:	CMTM4
Organism:	Homo sapiens
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CMTM4.

Description	E-value	Query Range	Subject Range
gi\|114662992 - gi\|114662992\|ref\|XP_523385.2\| PREDICTED: chemokine-like factor superfamily 4 isoform 2 [Pan troglody...	8.0E-81	[1..234]	[1..234]
CKLF4_MOUSE - CKLF-like MARVEL transmembrane domain-containing protein 4 OS=Mus musculus GN=Cmtm4 PE=1 SV=1	6.0E-66	[1..208]	[1..208]
gi\|25166625, gi\|... - gi\|62739441\|gb\|AAH93679.1\| CKLF-like MARVEL transmembrane domain containing 4 [Homo sapiens], gi\|316... gi\|114662994 - gi\|114662994\|ref\|XP_001158802.1\| PREDICTED: chemokine-like factor superfamily 4 isoform 1 [Pan trogl...	6.0E-66	[1..208]	[1..208]
gi\|109507708, gi... - ref\|XP_344718.1\| similar to chemokine-like factor super family 4 [Rattus norvegicus], gi\|109507708\|r...	3.0E-64	[1..208]	[1..208]
gi\|50540046, gi\|... - gi\|50540046\|ref\|NP_001002492.1\| CKLF-like MARVEL transmembrane domain containing 4 [Danio rerio], gi...	3.0E-45	[1..204]	[1..208]
gi\|47230522 - gi\|47230522\|emb\|CAF99715.1\| unnamed protein product [Tetraodon nigroviridis]	5.0E-44	[1..203]	[1..207]
gi\|76640772 - gi\|76640772\|ref\|XP_592654.2\| PREDICTED: similar to chemokine-like factor super family 4 [Bos taurus]	6.0E-43	[62..215]	[42..195]
gi\|109128848 - gi\|109128848\|ref\|XP_001084352.1\| PREDICTED: similar to chemokine-like factor superfamily 4 isoform 1...	1.0E-41	[62..208]	[57..203]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSGEELDGF EGEASSTSMI SGASSPYQPT TEPVSQRRGL AGLRCDPDYL RGALGRLKVA  60
   61 QVILALIAFI CIETIMACSP CEGLYFFEFV SCSAFVVTGV LLIMFSLNLH MRIPQINWNL 120
  121 TDLVNTGLSA FLFFIASIVL AALNHRAGAE IAAVIFGFLA TAAYAVNTFL AVQKWRVSVR 180
  181 QQSTNDYIRA RTESRDVDSR PEIQRLDTFS YSTNVTVRKK SPTNLLSLNH WQLA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.113509
Match:	PF01284.14
Description:	No description for PF01284.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits