YRC Public Data Repository - Protein Structure Prediction

Protein:	PSMD7
Organism:	Homo sapiens
Length:	324 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSMD7.

Description	E-value	Query Range	Subject Range
gi\|157908 - gi\|157908\|gb\|AAA28695.1\| Mov34	1.0E-97	[1..323]	[1..331]
gi\|109129064 - gi\|109129064\|ref\|XP_001102147.1\| PREDICTED: proteasome 26S non-ATPase subunit 7 [Macaca mulatta]	2.0E-92	[1..294]	[1..294]
gi\|27881842, gi\|... - gi\|42744553\|gb\|AAH66605.1\| Proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 (Mov34 homolog...	1.0E-91	[1..291]	[1..291]
PSMD7_BOVIN - 26S proteasome non-ATPase regulatory subunit 7 OS=Bos taurus GN=PSMD7 PE=2 SV=1	5.0E-91	[1..292]	[1..292]
gi\|118792569, gi... - gi\|118792569\|ref\|XP_320392.3\| ENSANGP00000013949 [Anopheles gambiae str. PEST], gi\|116116960\|gb\|EAA0...	1.0E-90	[1..323]	[1..335]
PSMD7_MOUSE - 26S proteasome non-ATPase regulatory subunit 7 OS=Mus musculus GN=Psmd7 PE=1 SV=2	4.0E-90	[1..285]	[1..285]
gi\|33875323 - gi\|33875323\|gb\|AAH00338.1\| PSMD7 protein [Homo sapiens]	7.0E-90	[1..285]	[1..285]
gi\|57087181 - gi\|57087181\|ref\|XP_536802.1\| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit 7 (2...	7.0E-90	[1..285]	[1..285]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPELAVQKVV VHPLVLLSVV DHFNRIGKVG NQKRVVGVLL GSWQKKVLDV SNSFAVPFDE  60
   61 DDKDDSVWFL DHDYLENMYG MFKKVNARER IVGWYHTGPK LHKNDIAINE LMKRYCPNSV 120
  121 LVIIDVKPKD LGLPTEAYIS VEEVHDDGTP TSKTFEHVTS EIGAEEAEEV GVEHLLRDIK 180
  181 DTTVGTLSQR ITNQVHGLKG LNSKLLDIRS YLEKVAT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.221849
Match:	2o95A
Description:	No description for 2o95A was found.

Predicted Domain #2

Region A:
Residues: [218-324]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKLPINHQII YQLQDVFNLL PDVSLQEFVK AFYLKTNDQM VVVYLASLIR SVVALHNLIN  60
   61 NKIANRDAEK KEGQEKEESK KDRKEDKEKD KDKEKSDVKK EEKKEKK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.801	N/A	N/A	a.47.2	t-snare proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits