YRC Public Data Repository - Protein Structure Prediction

Protein:	PSMC2
Organism:	Homo sapiens
Length:	433 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSMC2.

Description	E-value	Query Range	Subject Range
gi\|73981961 - gi\|73981961\|ref\|XP_533103.2\| PREDICTED: similar to proteasome (prosome, macropain) 26S subunit, ATPa...	0.0	[1..433]	[474..906]
gi\|74354958 - gi\|74354958\|gb\|AAI02392.1\| PSMC2 protein [Bos taurus]	2.0E-96	[1..433]	[24..456]
gi\|27735425 - gi\|27735425\|gb\|AAH41186.1\| Psmc2 protein [Xenopus laevis]	3.0E-96	[1..433]	[12..444]
gi\|33859604, gi\|... - gi\|33859604\|ref\|NP_035318.1\| proteasome (prosome, macropain) 26S subunit, ATPase 2 [Mus musculus], g...	1.0E-95	[1..433]	[43..475]
gi\|38181888 - gi\|38181888\|gb\|AAH61542.1\| Proteasome (prosome, macropain) 26S subunit, ATPase 2 [Rattus norvegicus]	2.0E-95	[1..433]	[1..433]
PRS7_PONAB - 26S protease regulatory subunit 7 OS=Pongo abelii GN=PSMC2 PE=2 SV=3 PRS7_PONPY - 26S protease regulatory subunit 7 - Pongo pygmaeus (Orangutan)	2.0E-95	[1..433]	[1..433]
gi\|76879893 - gi\|76879893\|dbj\|BAE45763.1\| putative protein product of Nbla10058 [Homo sapiens]	6.0E-95	[1..433]	[1..433]

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Predicted Domain #1

Region A:
Residues: [1-433]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDYLGADQR KTKEDEKDDK PIRALDEGDI ALLKTYGQST YSRQIKQVED DIQQLLKKIN  60
   61 ELTGIKESDT GLAPPALWDL AADKQTLQSE QPLQVARCTK IINADSEDPK YIINVKQFAK 120
  121 FVVDLSDQVA PTDIEEGMRV GVDRNKYQIH IPLPPKIDPT VTMMQVEEKP DVTYSDVGGC 180
  181 KEQIEKLREV VETPLLHPER FVNLGIEPPK GVLLFGPPGT GKTLCARAVA NRTDACFIRV 240
  241 IGSELVQKYV GEGARMVREL FEMARTKKAC LIFFDEIDAI GGARFDDGAG GDNEVQRTML 300
  301 ELINQLDGFD PRGNIKVLMA TNRPDTLDPA LMRPGRLDRK IEFSLPDLEG RTHIFKIHAR 360
  361 SMSVERDIRF ELLARLCPNS TGAEIRSVCT EAGMFAIRAR RKIATEKDFL EAVNKVIKSY 420
  421 AKFSATPRYM TYN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.69897
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits