YRC Public Data Repository - Protein Structure Prediction

Protein:	DDX3Y
Organism:	Homo sapiens
Length:	660 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DDX3Y.

Description	E-value	Query Range	Subject Range
gi\|6014945, gi\|2... - sp\|O15523\|DDXY_HUMAN DEAD-box protein 3, Y-chromosomal, gi\|2580556\|gb\|AAC51832.1\| dead box, Y isofo...	0.0	[1..660]	[1..660]
DDX3Y_PANTR - ATP-dependent RNA helicase DDX3Y OS=Pan troglodytes GN=DDX3Y PE=2 SV=1	0.0	[1..660]	[1..660]
DDX3Y_PONAB - ATP-dependent RNA helicase DDX3Y OS=Pongo abelii GN=DDX3Y PE=2 SV=1 DDX3Y_PONPY - ATP-dependent RNA helicase DDX3Y - Pongo pygmaeus (Orangutan)	0.0	[1..660]	[1..658]
gi\|74006730, gi\|... - gi\|74006732\|ref\|XP_538003.2\| PREDICTED: similar to DEAD-box protein 3, X-chromosomal (Helicase-like ...	0.0	[1..660]	[1..662]
tr\|G3GSH5\|G3GSH5... - ATP-dependent RNA helicase DDX3X OS=Cricetulus griseus GN=I79_000589 PE=3 SV=1 gi\|20373098 - gi\|20373098\|dbj\|BAB91216.1\| RNA helicase [Mesocricetus auratus]	0.0	[1..660]	[1..662]
DDX3X_MOUSE - ATP-dependent RNA helicase DDX3X OS=Mus musculus GN=Ddx3x PE=1 SV=3	0.0	[1..660]	[1..662]
gi\|109510438, gi... - gi\|109511507\|ref\|XP_001060162.1\| PREDICTED: similar to ATP-dependent RNA helicase DDX3X (DEAD box pr...	0.0	[1..660]	[1..662]

Back

Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHVVVKNDP ELDQQLANLD LNSEKQSGGA STASKGRYIP PHLRNREASK GFHDKDSSGW  60
   61 SCSKDKDAYS SFGSRDSRGK PGYFSERGSG SRGRFDDRGR SDYDGIGNRE RPGFGRFERS 120
  121 GHSRWCDK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [129-580]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVEDDWSKPL PPSERLEQEL FSGGNTGINF EKYDDIPVEA TGSNCPPHIE NFSDIDMGEI  60
   61 IMGNIELTRY TRPTPVQKHA IPIIKGKRDL MACAQTGSGK TAAFLLPILS QIYTDGPGEA 120
  121 LKAVKENGRY GRRKQYPISL VLAPTRELAV QIYEEARKFS YRSRVRPCVV YGGADIGQQI 180
  181 RDLERGCHLL VATPGRLVDM MERGKIGLDF CKYLVLDEAD RMLDMGFEPQ IRRIVEQDTM 240
  241 PPKGVRHTMM FSATFPKEIQ MLARDFLDEY IFLAVGRVGS TSENITQKVV WVEDLDKRSF 300
  301 LLDILGATGS DSLTLVFVET KKGADSLEDF LYHEGYACTS IHGDRSQRDR EEALHQFRSG 360
  361 KSPILVATAV AARGLDISNV RHVINFDLPS DIEEYVHRIG RTGRVGNLGL ATSFFNEKNM 420
  421 NITKDLLDLL VEAKQEVPSW LENMAYEHHY KG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	100.0
Match:	2i4iA
Description:	No description for 2i4iA was found.

Predicted Domain #3

Region A:
Residues: [581-660]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSRGRSKSNR FSGGFGARDY RQSSGSSSSG FGASRGSSSR SGGGGYGNSR GFGGGGYGGF  60
   61 YNSDGYGGNY NSQGVDWWGN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.04
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits