YRC Public Data Repository - Protein Structure Prediction

Protein:	AGPAT3
Organism:	Homo sapiens
Length:	376 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AGPAT3.

Description	E-value	Query Range	Subject Range
PLCC_PONPY - 1-acyl-sn-glycerol-3-phosphate acyltransferase gamma - Pongo pygmaeus (Orangutan) PLCC_PONAB - 1-acyl-sn-glycerol-3-phosphate acyltransferase gamma OS=Pongo abelii GN=AGPAT3 PE=2 SV=1	9.0E-90	[1..376]	[1..376]
gi\|50730068 - gi\|50730068\|ref\|XP_416756.1\| PREDICTED: similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase ga...	1.0E-89	[1..376]	[1..376]
PLCC_MOUSE - 1-acyl-sn-glycerol-3-phosphate acyltransferase gamma OS=Mus musculus GN=Agpat3 PE=1 SV=2	1.0E-89	[1..376]	[1..376]
gi\|114684605, gi... - gi\|114684611\|ref\|XP_001146861.1\| PREDICTED: hypothetical protein isoform 11 [Pan troglodytes], gi\|11...	2.0E-89	[1..376]	[1..376]
gi\|81673131, gi\|... - gi\|84000063\|ref\|NP_001033135.1\| 1-acylglycerol-3-phosphate O-acyltransferase 3 [Bos taurus], gi\|8167...	3.0E-89	[1..376]	[1..376]
gi\|149043597, gi... - gi\|34852354\|ref\|XP_215367.2\| PREDICTED: similar to 1-acylglycerol-3-phosphate O-acyltransferase 3 [R...	4.0E-89	[1..376]	[1..376]
gi\|27696870, gi\|... - gi\|27696870\|gb\|AAH43776.1\| Agpat3-prov protein [Xenopus laevis], gi\|147903465\|ref\|NP_001080456.1\| 1-...	9.0E-89	[1..374]	[1..374]

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Predicted Domain #1

Region A:
Residues: [1-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLAFLKTQ FVLHLLVGFV FVVSGLVINF VQLCTLALWP VSKQLYRRLN CRLAYSLWSQ  60
   61 LVMLLEWWSC TECTLFTDQA TVERFGKEHA VIILNHNFEI DFLCGWTMCE RFGVLGSSKV 120
  121 LAKKELLYVP LIGWTWYFLE IVFCKRKWEE DRDTVVEGLR RLSDYPEYMW FLLYCEGTRF 180
  181 TETKHRVSME VAAAKGLPVL KYHLLPRTKG FTTAVKCLRG TVAAVYDVTL NFRGNKNPSL 240
  241 LGILYGKKYE ADMCVRRFPL EDIPLDEKEA AQWLHKLYQE KDALQEIYNQ KGMFPGEQFK 300
  301

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.92
Match:	1k30A
Description:	Glycerol-3-phosphate (1)-acyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [301-376]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PARRPWTLLN FLSWATILLS PLFSFVLGVF ASGSPLLILT FLGFVGAASF GVRRLIGVTE  60
   61 IEKGSSYGNQ EFKKKE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits