YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|23272859
Organism: Homo sapiens
Length: 411 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23272859.

Description E-value Query
Range
Subject
Range
C4orf23 - chromosome 4 open reading frame 23
730.0 [0..5] [405..246]
TRM44_MOUSE - Probable tRNA (uracil-O(2)-)-methyltransferase OS=Mus musculus GN=Trmt44 PE=2 SV=2
726.0 [0..5] [405..202]
gi|109500842, gi... - ref|XP_223529.2| similar to RIKEN cDNA 2310079F23 [Rattus norvegicus], gi|109500842|ref|XP_001063887...
726.0 [0..5] [405..207]
gi|109073638 - gi|109073638|ref|XP_001118752.1| PREDICTED: similar to CG9386-PA [Macaca mulatta]
700.0 [0..5] [405..246]
gi|27694979 - gi|27694979|gb|AAH43909.1| LOC398534 protein [Xenopus laevis]
632.0 [0..6] [405..161]
gi|76680440 - gi|76680440|ref|XP_591154.2| PREDICTED: similar to CG9386-PA, partial [Bos taurus]
617.0 [0..5] [405..238]
gi|73951753 - gi|73951753|ref|XP_545909.2| PREDICTED: similar to CG9386-PA [Canis familiaris]
600.0 [0..5] [405..202]
gi|50747274 - gi|50747274|ref|XP_420816.1| PREDICTED: hypothetical protein [Gallus gallus]
539.0 [0..6] [405..165]

Back

Predicted Domain #1
Region A:
Residues: [1-252]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCIKFSSVIA KKNERWHSDG IVYPKPTWLG EELLAKLAKW SVENKKSDFK STLSLISIMK  60
   61 YSKAYQELKE KYKEMVKVWP EVTDPEKFVY EDVAIAAYLL ILWEEERAER RLTARQSFVD 120
  121 LGCGNGLLVH ILSSEGHPGR GIDVRRRKIW DMYGPQTQLE EDAITPNDKT LFPDVDWLIG 180
  181 NHSDELTPWI PVIAARSSYN CRFFVLPCCF FDFIGRYSRR QSKKTQYREY LDFIKEVGFT 240
  241 CGFHVDEDCL RI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [253-363]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSTKRVCLVG KSRTYPSSRE ASVDEKRTQY IKSRRGCPVS PPGWELSPSP RWVAAGSAGH  60
   61 CDGQQALDAR VGCVTRAWAA EHGAGPQAEG PWLPGFHPRE KAERVRNCAA L

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [364-411]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRDFIDQVVL QVANLLLGGK QLNTRSSRNG SLKTWNGGGK LSTILGRG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle