YRC Public Data Repository - Protein Structure Prediction

Protein:	SSR4
Organism:	Homo sapiens
Length:	173 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSR4.

Description	E-value	Query Range	Subject Range
gi\|133736995, gi... - gi\|84570093\|gb\|AAI10716.1\| LOC398633 protein [Xenopus laevis], gi\|133736995\|gb\|AAI33750.1\| LOC398633...	3.0E-76	[1..173]	[7..179]
gi\|109132737, gi... - gi\|109132739\|ref\|XP_001087023.1\| PREDICTED: similar to Translocon-associated protein delta subunit p...	1.0E-73	[20..173]	[20..173]
SSRD_RAT - Translocon-associated protein subunit delta OS=Rattus norvegicus GN=Ssr4 PE=2 SV=1	7.0E-73	[1..173]	[1..173]
gi\|12841787, gi\|... - gi\|14919430\|gb\|AAH08172.1\| Signal sequence receptor, delta [Mus musculus], gi\|148697929\|gb\|EDL29876....	7.0E-73	[1..173]	[1..173]
gi\|61371546, gi\|... - gi\|61371552\|gb\|AAX43688.1\| signal sequence receptor delta [synthetic construct], gi\|61371546\|gb\|AAX4...	4.0E-72	[24..173]	[24..173]
gi\|55726115 - gi\|55726115\|emb\|CAH89831.1\| hypothetical protein [Pongo abelii] gi\|197100743 - gi\|197100743\|ref\|NP_001127202.1\| signal sequence receptor, delta (translocon-associated protein delt...	1.0E-71	[24..173]	[27..176]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAMASLGAL ALLLLSSLSR CSAEACLEPQ ITPSYYTTSD AVISTETVFI VEISLTCKNR  60
   61 VQNMALYADV GGKQFPVTRG QDVGRYQVSW SLDHKSAHAG TYEVRFFDEE SYSLLRKAQR 120
  121 NNEDISIIPP LFTVSVDHRG TWNGPWVSTE VLAAAIGLVI YYLAFSAKSH IQA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	121.79588
Match:	PF05404.3
Description:	No description for PF05404.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits