YRC Public Data Repository - Protein Structure Prediction

Protein:	FUNDC1
Organism:	Homo sapiens
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FUNDC1.

Description	E-value	Query Range	Subject Range
FUND1_MOUSE - FUN14 domain-containing protein 1 OS=Mus musculus GN=Fundc1 PE=1 SV=1 FUND1_RAT - FUN14 domain-containing protein 1 OS=Rattus norvegicus GN=Fundc1 PE=1 SV=1	7.0E-62	[1..155]	[1..155]
gi\|74007318 - gi\|74007318\|ref\|XP_548961.2\| PREDICTED: similar to FUN14 domain containing 1 [Canis familiaris]	2.0E-61	[1..155]	[1..155]
FUND1_BOVIN - FUN14 domain-containing protein 1 OS=Bos taurus GN=FUNDC1 PE=2 SV=1	3.0E-61	[1..155]	[1..155]
gi\|109079825 - gi\|109079825\|ref\|XP_001083529.1\| PREDICTED: similar to FUN14 domain containing 1 [Macaca mulatta]	1.0E-58	[1..155]	[1..155]
gi\|50730085 - gi\|50730085\|ref\|XP_416763.1\| PREDICTED: similar to FUN14 domain containing 1 [Gallus gallus]	8.0E-55	[1..155]	[79..234]
gi\|33090009 - gi\|33090009\|gb\|AAP93875.1\| HCBP6 [Rattus norvegicus]	9.0E-50	[12..142]	[6..137]
gi\|57209640 - gi\|57209640\|emb\|CAI41658.1\| FUN14 domain containing 2 [Homo sapiens]	2.0E-49	[15..142]	[77..205]
FUD1B_XENLA - FUN14 domain-containing protein 1B OS=Xenopus laevis GN=fundc1-b PE=2 SV=1	2.0E-49	[13..155]	[47..188]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRNPPPQD YESDDDSYEV LDLTEYARRH QWWNRVFGHS SGPMVEKYSV ATQIVMGGVT  60
   61 GWCAGFLFQK VGKLAATAVG GGFLLLQIAS HSGYVQIDWK RVEKDVNKAK RQIKKRANKA 120
  121 APEINNLIEE ATEFIKQNIV ISSGFVGGFL LGLAS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.853872
Match:	PF04930.6
Description:	No description for PF04930.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits