YRC Public Data Repository - Protein Structure Prediction

Protein:	ACTG2
Organism:	Homo sapiens
Length:	376 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ACTG2.

Description	E-value	Query Range	Subject Range
gi\|109489498 - gi\|109489498\|ref\|XP_001076100.1\| PREDICTED: similar to Actin, cytoplasmic 2 (Gamma-actin) [Rattus no...	0.0	[3..376]	[311..684]
ACT_PLAMG - Actin, adductor muscle OS=Placopecten magellanicus PE=2 SV=1	0.0	[1..376]	[1..376]
gi\|33946351 - gi\|33946351\|gb\|AAQ55801.1\| actin [Thecamoeba similis]	0.0	[1..376]	[1..376]
ACT5_XENLA - Actin, cytoplasmic type 5 OS=Xenopus laevis PE=3 SV=1	0.0	[1..376]	[1..376]
gi\|110617755 - gi\|110617755\|gb\|ABG78596.1\| beta-actin [Mizuhopecten yessoensis]	0.0	[1..376]	[1..376]
gi\|18565104 - gi\|18565104\|dbj\|BAB84579.1\| Actin 2 [Crassostrea gigas]	0.0	[1..376]	[1..376]
ACT2_SCHMA - Actin-2 OS=Schistosoma mansoni PE=2 SV=1 gi\|6979994, gi\|1... - gi\|6979994\|gb\|AAF34686.1\| actin [Schistosoma japonicum], gi\|189503078\|gb\|ACE06920.1\| unknown [Schist... gi\|186462275 - gi\|186462275\|gb\|ACC78609.1\| actin [Schistosoma bovis]	0.0	[1..376]	[1..376]
gi\|477248 - gi\|477248\|pir\|\|A48449 Actin-1A - nematode (Onchocerca volvulus) gi\|170587332, gi... - gi\|170587334\|ref\|XP_001898432.1\| actin 1 [Brugia malayi], gi\|170587332\|ref\|XP_001898431.1\| actin 1 [...	0.0	[1..376]	[1..376]
gi\|162280613 - gi\|162280613\|gb\|ABX82967.1\| actin variant 2 [Dictyocaulus viviparus] gi\|39597978, gi\|... - gi\|39597978\|emb\|CAE68670.1\| Hypothetical protein CBG14574 [Caenorhabditis briggsae], gi\|39591933\|emb... gi\|157769655, gi... - gi\|157769655\|ref\|XP_001676648.1\| Hypothetical protein CBG14574 [Caenorhabditis briggsae AF16], gi\|15... act-4 - actin status:Confirmed UniProt:P10986 protein_id:AAB04575.1 gi\|38491405 - gi\|38491405\|gb\|AAR21857.1\| actin [Cooperia oncophora] gi\|66732611 - gi\|66732611\|gb\|AAY52453.1\| actin [Caenorhabditis remanei]	0.0	[1..376]	[1..376]

Back

Predicted Domain #1

Region A:
Residues: [1-376]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCEEETTALV CDNGSGLCKA GFAGDDAPRA VFPSIVGRPR HQGVMVGMGQ KDSYVGDEAQ  60
   61 SKRGILTLKY PIEHGIITNW DDMEKIWHHS FYNELRVAPE EHPTLLTEAP LNPKANREKM 120
  121 TQIMFETFNV PAMYVAIQAV LSLYASGRTT GIVLDSGDGV THNVPIYEGY ALPHAIMRLD 180
  181 LAGRDLTDYL MKILTERGYS FVTTAEREIV RDIKEKLCYV ALDFENEMAT AASSSSLEKS 240
  241 YELPDGQVIT IGNERFRCPE TLFQPSFIGM ESAGIHETTY NSIMKCDIDI RKDLYANNVL 300
  301 SGGTTMYPGI ADRMQKEITA LAPSTMKIKI IAPPERKYSV WIGGSILASL STFQQMWISK 360
  361 PEYDEAGPSI VHRKCF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	144.0
Match:	1hluA
Description:	Actin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits