YRC Public Data Repository - Protein Structure Prediction

Protein:	BCCIP
Organism:	Homo sapiens
Length:	314 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BCCIP.

Description	E-value	Query Range	Subject Range
gi\|109463059, gi... - gi\|109463059\|ref\|XP_001055516.1\| PREDICTED: similar to BRCA2 and CDKN1A interacting protein [Rattus ...	0.0	[1..314]	[56..370]
BCCIP_MOUSE - BRCA2 and CDKN1A-interacting protein OS=Mus musculus GN=Bccip PE=1 SV=1	1.0E-94	[1..314]	[1..316]
gi\|60654253 - gi\|60654253\|gb\|AAX29819.1\| BRCA2 and CDKN1A interacting protein [synthetic construct]	1.0E-93	[1..314]	[1..314]
gi\|61363404 - gi\|61363404\|gb\|AAX42384.1\| BRCA2 and CDKN1A interacting protein [synthetic construct] gi\|14602523 - gi\|14602523\|gb\|AAH09771.1\| BRCA2 and CDKN1A interacting protein [Homo sapiens]	1.0E-93	[1..314]	[1..314]
gi\|73998994 - gi\|73998994\|ref\|XP_535056.2\| PREDICTED: similar to BRCA2 and CDKN1A-interacting protein isoform BCCI...	1.0E-89	[1..314]	[1..315]
BCCIP_BOVIN - BRCA2 and CDKN1A-interacting protein OS=Bos taurus GN=BCCIP PE=2 SV=1	2.0E-89	[58..314]	[50..306]
gi\|50796740 - gi\|50796740\|ref\|XP_423888.1\| PREDICTED: similar to BRCA2 and CDKN1A interacting protein [Gallus gall...	2.0E-83	[1..313]	[1..303]
BCP1_EMENI - Protein bcp1 OS=Emericella nidulans GN=bcp1 PE=3 SV=1 BCP1_EMENI - Protein bcp1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=...	1.0E-81	[28..313]	[3..287]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRSKRRAV ESGVPQPPDP PVQRDEEEEK EVENEDEDDD DSDKEKDEED EVIDEEVNIE  60
   61 FEAYSLSDND YDGIKKLLQQ LFLKAPVNTA ELTDLLIQQN HIGSVIKQTD VSED

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [115-314]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNDDMDEDEV FGFISLLNLT ERKGTQCVEQ IQELVLRFCE KNCEKSMVEQ LDKFLNDTTK  60
   61 PVGLLLSERF INVPPQIALP MYQQLQKELA GAHRTNKPCG KCYFYLLISK TFVEAGKNNS 120
  121 KKKPSNKKKA ALMFANAEEE FFYEKAILKF NYSVQEESDT CLGGKWSFDD VPMTPLRTVM 180
  181 LIPGDKMNEI MDKLKEYLSV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits