YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP5G1
Organism:	Homo sapiens
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP5G1.

Description	E-value	Query Range	Subject Range
gi\|114581903 - gi\|114581903\|ref\|XP_525965.2\| PREDICTED: similar to mitochondrial ATP synthase subunit 9 precursor [...	2.0E-42	[1..136]	[140..281]
AT5G1_RAT - ATP synthase F(0) complex subunit C1, mitochondrial OS=Rattus norvegicus GN=Atp5g1 PE=1 SV=1	1.0E-36	[1..136]	[1..136]
gi\|74204278 - gi\|74204278\|dbj\|BAE39897.1\| unnamed protein product [Mus musculus]	6.0E-36	[1..136]	[1..136]
gi\|73966259, gi\|... - gi\|73966259\|ref\|XP_548181.2\| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial F0 c...	9.0E-36	[1..136]	[1..136]
AT5G1_SHEEP - ATP synthase F(0) complex subunit C1, mitochondrial OS=Ovis aries GN=ATP5G1 PE=1 SV=2	1.0E-34	[1..136]	[1..136]
AT5G1_BOVIN - ATP synthase F(0) complex subunit C1, mitochondrial OS=Bos taurus GN=ATP5G1 PE=1 SV=1	4.0E-34	[1..136]	[1..136]
gi\|50750427 - gi\|50750427\|ref\|XP_426577.1\| PREDICTED: similar to Cg1746-prov protein [Gallus gallus]	5.0E-34	[13..136]	[201..329]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTAGALFIS PALIRCCTRG LIRPVSASFL NSPVNSSKQP SYSNFPLQVA RREFQTSVVS  60
   61 RDIDTAAKFI GAGAATVGVA GSGAGIGTVF GSLIIGYARN PSLKQQLFSY AILGFALSEA 120
  121 MGLFCLMVAF LILFAM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.0
Match:	1yceA
Description:	Structure of the rotor ring of F-type Na+-ATPase from Ilyobacter tartaricus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits